Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LGG | TCGA-DU-A5TP-01A | TCGA-DU-A5TP | SPOP|PRDM16 | SPOP | PRDM16 | 17 | 1 | -1 | 1 | 3 | 1 | 1 | 0.96 | 47755295 | 3301716 | tier4 | 5UTR-CDS | 16760 | NA | 0 |
| SARC | TCGA-DX-AB2X-01A | TCGA-DX-AB2X | RPL22|PRDM16 | RPL22 | PRDM16 | 1 | 1 | -1 | 1 | 128 | 174 | 162 | 0.015 | 6257712 | 3342145 | tier1 | Out-of-frame | 14993 | NA | 0 |
| LGG | TCGA-DU-8161-01A | TCGA-DU-8161 | PER3|CELA2A | PER3 | CELA2A | 1 | 1 | 1 | 1 | 5 | 8 | 7 | 0.8 | 7845646 | 15792494 | tier1 | In-frame | 12615 | NA | 0.36767 |
| BRCA | TCGA-A2-A25F-01A | TCGA-A2-A25F | C1orf135|PADI1 | C1orf135 | PADI1 | 1 | 1 | -1 | 1 | 3 | 1 | 1 | 1 | 26185771 | 17548785 | tier3 | Out-of-frame | 2590 | NA | 0 |
| ESCA | TCGA-L5-A4OS-01A | TCGA-L5-A4OS | GRB2|PADI1 | GRB2 | PADI1 | 17 | 1 | -1 | 1 | 4 | 13 | 12 | 0.51 | 73317740 | 17570505 | tier1 | In-frame | 7409 | NA | 0.3792 |
| OV | TCGA-25-2400-01A | TCGA-25-2400 | NECAP2|EPHA2 | NECAP2 | EPHA2 | 1 | 1 | 1 | -1 | 2 | 12 | 10 | 1 | 16775696 | 16456914 | tier2 | In-frame | 11324 | non-validated | 0.38327 |
| UCEC | TCGA-AJ-A3NH-01A | TCGA-AJ-A3NH | PEX14|EPHA2 | PEX14 | EPHA2 | 1 | 1 | 1 | -1 | 11 | 3 | 2 | 0.28 | 10555378 | 16458934 | tier1 | Out-of-frame | 12628 | NA | 0.38325 |
| CESC | TCGA-EA-A1QS-01A | TCGA-EA-A1QS | ZBTB20|PGD | ZBTB20 | PGD | 3 | 1 | -1 | 1 | 10 | 6 | 4 | 0.91 | 114519948 | 10479474 | tier1 | 5UTR-CDS | 20096 | NA | 0 |
| COAD | TCGA-A6-5664-01A | TCGA-A6-5664 | PITPNM2|PGD | PITPNM2 | PGD | 12 | 1 | -1 | 1 | 3 | 7 | 7 | 0.47 | 123594932 | 10459686 | tier1 | 5UTR-CDS | 12898 | NA | 0.36834 |
| GBM | TCGA-06-0879-01A | TCGA-06-0879 | PER3|PGD | PER3 | PGD | 1 | 1 | 1 | 1 | 3 | 3 | 3 | 1.5 | 7890221 | 10471475 | tier4 | Out-of-frame | 12618 | NA | 0.37285 |
| PAAD | TCGA-HZ-8003-01A | TCGA-HZ-8003 | ACTB|CELA3A | ACTB | CELA3A | 7 | 1 | -1 | 1 | 2 | 2 | 1 | 0.06 | 5567255 | 22328149 | tier3 | 3UTR-5UTR | 334 | NA | 0.3717 |
| PAAD | TCGA-HZ-A77O-01A | TCGA-HZ-A77O | ACTB|CELA3A | ACTB | CELA3A | 7 | 1 | -1 | 1 | 2 | 3 | 2 | 0.06 | 5567255 | 22328149 | tier3 | 3UTR-5UTR | 335 | NA | 0.3717 |
| BRCA | TCGA-AN-A0FJ-01A | TCGA-AN-A0FJ | UBR4|HSPG2 | UBR4 | HSPG2 | 1 | 1 | -1 | -1 | 3 | 4 | 3 | 0.67 | 19495929 | 22170792 | tier1 | Out-of-frame | 19148 | NA | 0 |
| UCEC | TCGA-EO-A3KW-01A | TCGA-EO-A3KW | USP48|HSPG2 | USP48 | HSPG2 | 1 | 1 | -1 | -1 | 5 | 5 | 3 | 0.055 | 22109317 | 22160107 | tier1 | Out-of-frame | 19400 | NA | 0 |
| BLCA | TCGA-DK-A6B2-01A | TCGA-DK-A6B2 | SAMD13|PRKACB | SAMD13 | PRKACB | 1 | 1 | 1 | 1 | 9 | 6 | 5 | 0.87 | 84768970 | 84662299 | tier1 | In-frame | 15286 | NA | 0 |
| HNSC | TCGA-MT-A67F-01A | TCGA-MT-A67F | RBM17|PRKACB | RBM17 | PRKACB | 10 | 1 | 1 | 1 | 33 | 14 | 12 | 0.6 | 6148201 | 84644860 | tier1 | In-frame | 14446 | NA | 0 |
| SKCM | TCGA-D3-A3C1-06A | TCGA-D3-A3C1 | RPF1|PRKACB | RPF1 | PRKACB | 1 | 1 | 1 | 1 | 6 | 6 | 5 | 0.22 | 84945192 | 84700863 | tier1 | In-frame | 14973 | NA | 0 |
| BRCA | TCGA-A7-A2KD-01A | TCGA-A7-A2KD | IFI44L|SLC44A3 | IFI44L | SLC44A3 | 1 | 1 | 1 | 1 | 11 | 4 | 4 | 0.21 | 79086256 | 95322891 | tier1 | 5UTR-CDS | 8059 | NA | 0.33624 |
| PRAD | TCGA-EJ-5518-01A | TCGA-EJ-5518 | CEP350|GPR161 | CEP350 | GPR161 | 1 | 1 | 1 | -1 | 11 | 10 | 9 | 0.11 | 179924277 | 168074132 | tier1 | 5UTR-5UTR | 3550 | NA | 0.36577 |
| SARC | TCGA-DX-A6BG-01A | TCGA-DX-A6BG | SFT2D2|GPR161 | SFT2D2 | GPR161 | 1 | 1 | 1 | -1 | 7 | 4 | 4 | 0.11 | 168195380 | 168074132 | tier1 | CDS-5UTR | 15765 | NA | 0 |
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