Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LIHC | TCGA-NI-A8LF-01A | TCGA-NI-A8LF | SH3GL1|DPP9 | SH3GL1 | DPP9 | 19 | 19 | -1 | -1 | 3 | 3 | 3 | 0.031 | 4400321 | 4679958 | tier1 | Out-of-frame | 15820 | NA | 0 |
| LGG | TCGA-DU-8166-01A | TCGA-DU-8166 | SPON1|SIRT3 | SPON1 | SIRT3 | 11 | 11 | 1 | -1 | 27 | 5 | 5 | 1.7 | 14063201 | 233534 | tier1 | In-frame | 16744 | NA | 0 |
| LUAD | TCGA-NJ-A4YP-01A | TCGA-NJ-A4YP | S100A6|COL6A1 | S100A6 | COL6A1 | 1 | 21 | -1 | 1 | 2 | 291 | 3 | 0.35 | 153507075 | 47407069 | tier4 | 3UTR-CDS | 15236 | NA | 0 |
| SARC | TCGA-DX-A7EM-01A | TCGA-DX-A7EM | ACTA2|COL6A1 | ACTA2 | COL6A1 | 10 | 21 | -1 | 1 | 4 | 81 | 1 | 0.26 | 90694833 | 47407069 | tier4 | 3UTR-CDS | 330 | NA | 0.37574 |
| SKCM | TCGA-DA-A3F5-06A | TCGA-DA-A3F5 | RUNX1|IFNAR1 | RUNX1 | IFNAR1 | 21 | 21 | -1 | 1 | 25 | 7 | 5 | 0.46 | 36206707 | 34725064 | tier4 | Out-of-frame | 15179 | non-validated | 0 |
| BRCA | TCGA-BH-A0EE-01A | TCGA-BH-A0EE | DOPEY2|TRPM2 | DOPEY2 | TRPM2 | 21 | 21 | 1 | 1 | 18 | 16 | 16 | 0.49 | 37537169 | 45825025 | tier1 | In-frame | 5060 | NA | 0.3555 |
| PRAD | TCGA-G9-6354-01A | TCGA-G9-6354 | ZNF461|AKT1 | ZNF461 | AKT1 | 19 | 14 | -1 | -1 | 3 | 2 | 1 | 0.44 | 37147350 | 105246553 | tier3 | In-frame | 20514 | NA | 0 |
| UCEC | TCGA-5B-A90C-01A | TCGA-5B-A90C | DHX34|SAE1 | DHX34 | SAE1 | 19 | 19 | 1 | 1 | 8 | 7 | 6 | 0.39 | 47865950 | 47712416 | tier1 | In-frame | 4798 | NA | 0.37011 |
| LAML | TCGA-AB-2938-03A | TCGA-AB-2938 | SLC35G6|FBN3 | SLC35G6 | FBN3 | 17 | 19 | 1 | -1 | 15 | 24 | 24 | 0.62 | 7388176 | 8156474 | tier1 | Out-of-frame | 16168 | NA | 0 |
| ACC | TCGA-OR-A5J9-01A | TCGA-OR-A5J9 | DNM2|SLC47A1 | DNM2 | SLC47A1 | 19 | 17 | 1 | 1 | 2 | 3 | 2 | 0.054 | 10942573 | 19482057 | tier2 | 3UTR-3UTR | 4991 | NA | 0.37695 |
| BRCA | TCGA-OL-A5RZ-01A | TCGA-OL-A5RZ | SPAG5|SLC47A1 | SPAG5 | SLC47A1 | 17 | 17 | -1 | 1 | 29 | 14 | 13 | 1.6 | 26912882 | 19445706 | tier1 | In-frame | 16654 | NA | 0 |
| BRCA | TCGA-AC-A5XU-01A | TCGA-AC-A5XU | ZC3H3|KLK3 | ZC3H3 | KLK3 | 8 | 19 | -1 | 1 | 18 | 10 | 9 | 0.77 | 144547887 | 51359496 | tier1 | Out-of-frame | 20140 | NA | 0 |
| PRAD | TCGA-KK-A8ID-01A | TCGA-KK-A8ID | KCTD7|KLK3 | KCTD7 | KLK3 | 7 | 19 | 1 | 1 | 2 | 1 | 1 | 0.094 | 66104215 | 51358171 | tier4 | CDS-5UTR | 8622 | NA | 0.35607 |
| PRAD | TCGA-HC-7742-01A | TCGA-HC-7742 | MXI1|KLK3 | MXI1 | KLK3 | 10 | 19 | 1 | 1 | 2 | 1 | 1 | 2.9 | 112046264 | 51358171 | tier3 | 3UTR-5UTR | 10870 | NA | 0.36715 |
| PRAD | TCGA-V1-A8WN-01A | TCGA-V1-A8WN | MYH9|KLK3 | MYH9 | KLK3 | 22 | 19 | -1 | 1 | 2 | 1 | 1 | 0.51 | 36685235 | 51358191 | tier4 | NA | 10908 | NA | 0.38132 |
| BRCA | TCGA-A8-A09E-01A | TCGA-A8-A09E | TRIM11|SLC2A5 | TRIM11 | SLC2A5 | 1 | 1 | -1 | -1 | 26 | 27 | 26 | 0.033 | 228588665 | 9098565 | tier1 | In-frame | 18608 | NA | 0 |
| BRCA | TCGA-AR-A0TS-01A | TCGA-AR-A0TS | U2AF2|RERE | U2AF2 | RERE | 19 | 1 | 1 | -1 | 15 | 6 | 6 | 0.006 | 56172555 | 8426034 | tier1 | In-frame | 19013 | NA | 0 |
| BRCA | TCGA-A2-A04W-01A | TCGA-A2-A04W | VPS13D|RERE | VPS13D | RERE | 1 | 1 | 1 | -1 | 4 | 9 | 8 | 0.38 | 12294420 | 8601377 | tier1 | Out-of-frame | 19632 | NA | 0 |
| COAD | TCGA-A6-5664-01A | TCGA-A6-5664 | KIF1B|RERE | KIF1B | RERE | 1 | 1 | 1 | -1 | 3 | 1 | 1 | 0.072 | 10435431 | 8617582 | tier3 | Out-of-frame | 8963 | NA | 0.38405 |
| DLBC | TCGA-GS-A9TZ-01A | TCGA-GS-A9TZ | CIITA|PRDM16 | CIITA | PRDM16 | 16 | 1 | 1 | 1 | 652 | 390 | 347 | 0.24 | 10971239 | 3301716 | tier1 | Out-of-frame | 3734 | NA | 0.37046 |
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