TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
LUSC	TCGA-21-A5DI-01A	TCGA-21-A5DI	CCDC57\|CSNK1D	CCDC57	CSNK1D	17	17	-1	-1	26	11	9	0.11	80085568	80211120	tier1	Out-of-frame	3146	NA	0.38019
UCEC	TCGA-B5-A5OD-01A	TCGA-B5-A5OD	CCDC57\|CSNK1D	CCDC57	CSNK1D	17	17	-1	-1	9	13	13	0.11	80109436	80209403	tier1	In-frame	3147	NA	0.38019
GBM	TCGA-06-5413-01A	TCGA-06-5413	RTTN\|MAPK4	RTTN	MAPK4	18	18	-1	1	3	2	2	0.34	67866650	48189459	tier1	CDS-5UTR	15174	NA	0
SKCM	TCGA-EE-A2GU-06A	TCGA-EE-A2GU	ORC4\|MAPK4	ORC4	MAPK4	2	18	-1	1	18	25	24	0.15	148709942	48255528	tier2	Out-of-frame	12049	NA	0.37455
BLCA	TCGA-GU-AATP-01A	TCGA-GU-AATP	GRB7\|ERBB2	GRB7	ERBB2	17	17	1	1	6	5	5	0.031	37894386	37844949	tier1	5UTR-5UTR	7415	NA	0.389
BLCA	TCGA-DK-A2I6-01A	TCGA-DK-A2I6	MTSS1\|ERBB2	MTSS1	ERBB2	8	17	-1	1	13	10	10	0.85	125740125	37863243	tier1	Out-of-frame	10841	NA	0.38588
CESC	TCGA-LP-A5U3-01A	TCGA-LP-A5U3	GRB7\|ERBB2	GRB7	ERBB2	17	17	1	1	888	70	65	0.031	37898709	37863243	tier1	Out-of-frame	7416	NA	0.389
CESC	TCGA-VS-A9U5-01A	TCGA-VS-A9U5	PGAP3\|ERBB2	PGAP3	ERBB2	17	17	-1	1	5	6	5	0.13	37842175	37844949	tier1	CDS-5UTR	12651	NA	0.38259
CESC	TCGA-VS-A9V0-01A	TCGA-VS-A9V0	PGAP3\|ERBB2	PGAP3	ERBB2	17	17	-1	1	54	35	33	0.13	37840850	37880979	tier1	In-frame	12652	NA	0.38259
LUSC	TCGA-L3-A524-01A	TCGA-L3-A524	CASC3\|ERBB2	CASC3	ERBB2	17	17	1	1	4	5	3	0.24	38297860	37844949	tier2	CDS-5UTR	3004	NA	0.38537
BRCA	TCGA-B6-A0I9-01A	TCGA-B6-A0I9	ASTN2\|PNMT	ASTN2	PNMT	9	17	-1	1	90	38	37	0.056	120053605	37825882	tier1	Out-of-frame	1549	NA	0.33857
BRCA	TCGA-3C-AALI-01A	TCGA-3C-AALI	IKZF3\|PNMT	IKZF3	PNMT	17	17	-1	1	305	498	461	0.4	38020373	37825882	tier4	In-frame	8153	NA	0.37384
BRCA	TCGA-A2-A04W-01A	TCGA-A2-A04W	SLC35B1\|IGFBP4	SLC35B1	IGFBP4	17	17	-1	1	80	45	44	0.19	47784327	38609237	tier1	In-frame	16157	NA	0
STAD	TCGA-VQ-A91S-01A	TCGA-VQ-A91S	MED15\|FKBP10	MED15	FKBP10	22	17	1	1	50	955	883	0.026	20891491	39977906	tier1	Out-of-frame	10197	NA	0.36125
BLCA	TCGA-ZF-AA5H-01A	TCGA-ZF-AA5H	C19orf42\|CACNA1A	C19orf42	CACNA1A	19	19	-1	-1	22	25	24	3	16770206	13366073	tier1	Out-of-frame	2576	NA	0
LUAD	TCGA-44-2657-01A	TCGA-44-2657	ZNF302\|CACNA1A	ZNF302	CACNA1A	19	19	1	-1	2	3	2	0.9	35169718	13366073	tier2	In-frame	20454	NA	0
PRAD	TCGA-KK-A5A1-01A	TCGA-KK-A5A1	ZNF433\|CACNA1A	ZNF433	CACNA1A	19	19	-1	-1	2	2	2	2.5	12140955	13341023	tier3	NA	20505	NA	0
STAD	TCGA-MX-A666-01A	TCGA-MX-A666	PDCD2L\|CACNA1A	PDCD2L	CACNA1A	19	19	1	-1	2	34	31	1.2	34904752	13482593	tier2	In-frame	12450	NA	0.3609
UCEC	TCGA-PG-A7D5-01A	TCGA-PG-A7D5	SH3GLB2\|CACNA1A	SH3GLB2	CACNA1A	9	19	-1	-1	2	3	3	0.92	131790371	13414698	tier2	In-frame	15824	NA	0
BRCA	TCGA-AC-A2FM-01A	TCGA-AC-A2FM	EPS15L1\|BRD4	EPS15L1	BRD4	19	19	-1	-1	11	3	2	0.16	16545176	15383944	tier1	CDS-5UTR	5701	NA	0.37172

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