Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-BH-A1ES-06A | TCGA-BH-A1ES | SEPT9|ARSG | SEPT9 | ARSG | 17 | 17 | 1 | 1 | 60 | 22 | 18 | 0.56 | 75303279 | 66339745 | tier1 | 5UTR-CDS | 15601 | NA | 0 |
| BRCA | TCGA-EW-A1OX-01A | TCGA-EW-A1OX | BCAS3|ABCA8 | BCAS3 | ABCA8 | 17 | 17 | 1 | -1 | 42 | 26 | 19 | 0.74 | 58885437 | 66865920 | tier1 | In-frame | 1972 | NA | 0.34759 |
| BRCA | TCGA-AQ-A04H-01B | TCGA-AQ-A04H | RAC3|ABCA8 | RAC3 | ABCA8 | 17 | 17 | 1 | -1 | 3 | 5 | 5 | 2.6 | 79989672 | 66865920 | tier1 | In-frame | 14152 | NA | 0 |
| LUSC | TCGA-J1-A4AH-01A | TCGA-J1-A4AH | CEP192|AFG3L2 | CEP192 | AFG3L2 | 18 | 18 | 1 | -1 | 26 | 9 | 9 | 0.26 | 13001581 | 12329782 | tier1 | Out-of-frame | 3546 | NA | 0.3575 |
| OV | TCGA-09-1673-01A | TCGA-09-1673 | C18orf1|IMPA2 | C18orf1 | IMPA2 | 18 | 18 | 1 | 1 | 2 | 6 | 6 | 0.5 | 13278187 | 11999053 | tier2 | 5UTR-CDS | 2537 | NA | 0 |
| PAAD | TCGA-IB-A7M4-01A | TCGA-IB-A7M4 | SEH1L|IMPA2 | SEH1L | IMPA2 | 18 | 18 | 1 | 1 | 34 | 27 | 26 | 0.68 | 12951904 | 11999053 | tier1 | In-frame | 15534 | NA | 0 |
| PRAD | TCGA-ZG-A9M4-01A | TCGA-ZG-A9M4 | ZCCHC14|IMPA2 | ZCCHC14 | IMPA2 | 16 | 18 | -1 | 1 | 3 | 4 | 4 | 0.033 | 87493614 | 11999053 | tier1 | Out-of-frame | 20163 | NA | 0 |
| SARC | TCGA-X6-A7W8-01A | TCGA-X6-A7W8 | FAM38B|IMPA2 | FAM38B | IMPA2 | 18 | 18 | -1 | 1 | 14 | 9 | 8 | 0.54 | 10672687 | 12030342 | tier2 | Out-of-frame | 6174 | NA | 0.34613 |
| BRCA | TCGA-AR-A1AI-01A | TCGA-AR-A1AI | ELP2|GALNT1 | ELP2 | GALNT1 | 18 | 18 | 1 | 1 | 16 | 23 | 19 | 0.8 | 33713279 | 33234524 | tier1 | CDS-5UTR | 5538 | NA | 0.37562 |
| LUSC | TCGA-63-A5MR-01A | TCGA-63-A5MR | FHOD3|GALNT1 | FHOD3 | GALNT1 | 18 | 18 | 1 | 1 | 14 | 8 | 7 | 0.68 | 33877963 | 33243592 | tier1 | Out-of-frame | 6529 | NA | 0.35356 |
| LUSC | TCGA-77-8138-01A | TCGA-77-8138 | C18orf45|NPC1 | C18orf45 | NPC1 | 18 | 18 | -1 | -1 | 4 | 2 | 1 | 0.5 | 20889644 | 21131691 | tier2 | In-frame | 2543 | NA | 0 |
| STAD | TCGA-CD-8526-01A | TCGA-CD-8526 | TTC39C|NPC1 | TTC39C | NPC1 | 18 | 18 | 1 | -1 | 3 | 4 | 3 | 0.89 | 21663045 | 21153538 | tier1 | In-frame | 18858 | NA | 0 |
| LUSC | TCGA-85-A4CN-01A | TCGA-85-A4CN | ARHGAP44|SLC13A5 | ARHGAP44 | SLC13A5 | 17 | 17 | 1 | -1 | 3 | 1 | 1 | 0.49 | 12693208 | 6610097 | tier4 | Out-of-frame | 1260 | NA | 0.32925 |
| SARC | TCGA-DX-A6YT-01A | TCGA-DX-A6YT | UTP6|SLC13A5 | UTP6 | SLC13A5 | 17 | 17 | -1 | -1 | 3 | 4 | 4 | 0.041 | 30219279 | 6610475 | tier1 | Out-of-frame | 19453 | NA | 0 |
| PRAD | TCGA-KK-A8ID-01A | TCGA-KK-A8ID | RABEP1|MINK1 | RABEP1 | MINK1 | 17 | 17 | 1 | 1 | 10 | 9 | 8 | 0.96 | 5281527 | 4781612 | tier1 | In-frame | 14135 | NA | 0 |
| CHOL | TCGA-W5-AA31-01A | TCGA-W5-AA31 | SYNRG|PIK3R5 | SYNRG | PIK3R5 | 17 | 17 | -1 | -1 | 10 | 8 | 8 | 1.3 | 35939228 | 8809054 | tier2 | Out-of-frame | 17263 | NA | 0 |
| BLCA | TCGA-DK-A2I6-01A | TCGA-DK-A2I6 | RBBP8|TP53 | RBBP8 | TP53 | 18 | 17 | 1 | -1 | 7 | 12 | 11 | 0.31 | 20596887 | 7579940 | tier1 | CDS-5UTR | 14419 | NA | 0 |
| SARC | TCGA-IE-A3OV-01A | TCGA-IE-A3OV | CIZ1|SLC16A3 | CIZ1 | SLC16A3 | 9 | 17 | -1 | 1 | 5 | 2 | 2 | 0.23 | 130938630 | 80193859 | tier1 | CDS-5UTR | 3742 | NA | 0.35998 |
| BLCA | TCGA-BL-A0C8-01A | TCGA-BL-A0C8 | ARL16|CSNK1D | ARL16 | CSNK1D | 17 | 17 | -1 | -1 | 2 | 1 | 1 | 0.3 | 79650566 | 80223672 | tier2 | Out-of-frame | 1400 | non-validated | 0.38031 |
| LIHC | TCGA-BC-A10T-01A | TCGA-BC-A10T | CCDC57|CSNK1D | CCDC57 | CSNK1D | 17 | 17 | -1 | -1 | 2 | 1 | 1 | 0.11 | 80085568 | 80223672 | tier3 | In-frame | 3148 | NA | 0.38019 |
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