Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-E2-A14V-01A | TCGA-E2-A14V | MKS1|KSR1 | MKS1 | KSR1 | 17 | 17 | -1 | 1 | 2 | 4 | 4 | 0.54 | 56293449 | 25909672 | tier2 | Out-of-frame | 10439 | NA | 0.3663 |
| BRCA | TCGA-AC-A5XU-01A | TCGA-AC-A5XU | PLEC|KSR1 | PLEC | KSR1 | 8 | 17 | -1 | 1 | 2 | 1 | 1 | 0.28 | 145049345 | 25877594 | tier2 | CDS-5UTR | 12988 | NA | 0.3549 |
| LUAD | TCGA-44-A47B-01A | TCGA-44-A47B | CYTH1|KSR1 | CYTH1 | KSR1 | 17 | 17 | -1 | 1 | 5 | 1 | 1 | 0.061 | 76732774 | 25877594 | tier3 | NA | 4511 | NA | 0.3733 |
| LUSC | TCGA-66-2800-01A | TCGA-66-2800 | CDR2L|KSR1 | CDR2L | KSR1 | 17 | 17 | 1 | 1 | 4 | 1 | 1 | 0.8 | 72984217 | 25810684 | tier3 | CDS-5UTR | 3476 | NA | 0.36241 |
| HNSC | TCGA-P3-A6T7-01A | TCGA-P3-A6T7 | CTCF|GFOD2 | CTCF | GFOD2 | 16 | 16 | 1 | -1 | 2 | 3 | 3 | 3.6 | 67663436 | 67719705 | tier3 | CDS-5UTR | 4312 | NA | 0.37253 |
| PRAD | TCGA-YL-A8HL-01A | TCGA-YL-A8HL | CORO7|GFOD2 | CORO7 | GFOD2 | 16 | 16 | -1 | -1 | 9 | 7 | 7 | 0.26 | 4455492 | 67709956 | tier1 | Out-of-frame | 4085 | NA | 0.3559 |
| ACC | TCGA-OR-A5J7-01A | TCGA-OR-A5J7 | NFE2L1|NPEPPS | NFE2L1 | NPEPPS | 17 | 17 | 1 | 1 | 9 | 7 | 7 | 0.22 | 46125824 | 45673719 | tier1 | 5UTR-CDS | 11453 | NA | 0.36792 |
| BRCA | TCGA-BH-A0BP-01A | TCGA-BH-A0BP | PNPO|NPEPPS | PNPO | NPEPPS | 17 | 17 | 1 | 1 | 2 | 4 | 4 | 6.5 | 46020796 | 45669322 | tier2 | Out-of-frame | 13126 | NA | 0.35024 |
| BRCA | TCGA-B6-A0WV-01A | TCGA-B6-A0WV | MED24|SSH2 | MED24 | SSH2 | 17 | 17 | -1 | -1 | 8 | 3 | 3 | 0.003 | 38209551 | 28030080 | tier1 | Out-of-frame | 10219 | NA | 0.36841 |
| BRCA | TCGA-A2-A04X-01A | TCGA-A2-A04X | MYO1D|SSH2 | MYO1D | SSH2 | 17 | 17 | -1 | -1 | 4 | 14 | 12 | 0.49 | 30980861 | 28175947 | tier1 | In-frame | 10976 | validated | 0.37081 |
| BRCA | TCGA-C8-A1HK-01A | TCGA-C8-A1HK | PPP6R3|SSH2 | PPP6R3 | SSH2 | 11 | 17 | 1 | -1 | 49 | 52 | 49 | 0.14 | 68321725 | 28030080 | tier1 | In-frame | 13470 | NA | 0.36264 |
| BRCA | TCGA-C8-A275-01A | TCGA-C8-A275 | TANC2|SSH2 | TANC2 | SSH2 | 17 | 17 | 1 | -1 | 6 | 14 | 14 | 0.32 | 61086987 | 28004759 | tier2 | Out-of-frame | 17382 | NA | 0 |
| HNSC | TCGA-F7-8298-01A | TCGA-F7-8298 | UBE2O|SSH2 | UBE2O | SSH2 | 17 | 17 | -1 | -1 | 2 | 2 | 2 | 0.51 | 74448807 | 27963820 | tier2 | Out-of-frame | 19089 | NA | 0 |
| STAD | TCGA-VQ-A94U-01A | TCGA-VQ-A94U | DDX52|SSH2 | DDX52 | SSH2 | 17 | 17 | -1 | -1 | 3 | 11 | 11 | 0.17 | 35984390 | 28030080 | tier1 | Out-of-frame | 4671 | NA | 0.3662 |
| UCEC | TCGA-BK-A26L-01C | TCGA-BK-A26L | MYO19|SSH2 | MYO19 | SSH2 | 17 | 17 | -1 | -1 | 6 | 14 | 12 | 0.034 | 34881059 | 28120955 | tier1 | In-frame | 10959 | non-validated | 0.36619 |
| BRCA | TCGA-E2-A14Y-01A | TCGA-E2-A14Y | MED1|RHBDL3 | MED1 | RHBDL3 | 17 | 17 | -1 | 1 | 5 | 7 | 7 | 0.97 | 37604051 | 30615811 | tier1 | In-frame | 10160 | NA | 0.35628 |
| BLCA | TCGA-DK-AA6X-01A | TCGA-DK-AA6X | NF1|SPACA3 | NF1 | SPACA3 | 17 | 17 | 1 | 1 | 14 | 21 | 20 | 0.11 | 29497015 | 31323861 | tier1 | In-frame | 11415 | NA | 0.37181 |
| BRCA | TCGA-A8-A06Z-01A | TCGA-A8-A06Z | USP22|SPACA3 | USP22 | SPACA3 | 17 | 17 | -1 | 1 | 3 | 7 | 5 | 2 | 20945978 | 31323861 | tier1 | Out-of-frame | 19337 | NA | 0 |
| SARC | TCGA-WK-A8Y0-01A | TCGA-WK-A8Y0 | DHX8|SPACA3 | DHX8 | SPACA3 | 17 | 17 | 1 | 1 | 435 | 282 | 273 | 1.6 | 41561553 | 31323861 | tier1 | In-frame | 4812 | NA | 0.34871 |
| BLCA | TCGA-DK-A2I6-01A | TCGA-DK-A2I6 | TMCC1|ARSG | TMCC1 | ARSG | 3 | 17 | -1 | 1 | 7 | 6 | 6 | 0.22 | 129513167 | 66364689 | tier1 | Out-of-frame | 17896 | NA | 0 |
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