TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
THCA	TCGA-DJ-A3UV-01A	TCGA-DJ-A3UV	ETV6\|NTRK3	ETV6	NTRK3	12	15	1	-1	26	15	14	5.5	12006495	88576276	tier1	In-frame	5872	NA	0.39062
THCA	TCGA-DJ-A4V0-01A	TCGA-DJ-A4V0	ETV6\|NTRK3	ETV6	NTRK3	12	15	1	-1	11	10	8	5.5	12006495	88576276	tier1	In-frame	5873	NA	0.39062
THCA	TCGA-E8-A438-01A	TCGA-E8-A438	ETV6\|NTRK3	ETV6	NTRK3	12	15	1	-1	15	12	10	5.5	12006495	88576276	tier1	In-frame	5874	NA	0.39062
THCA	TCGA-EL-A3ZN-01A	TCGA-EL-A3ZN	ETV6\|NTRK3	ETV6	NTRK3	12	15	1	-1	13	16	13	5.5	12006495	88576276	tier1	In-frame	5876	NA	0.39062
THCA	TCGA-FE-A3PD-01A	TCGA-FE-A3PD	ETV6\|NTRK3	ETV6	NTRK3	12	15	1	-1	44	22	22	5.5	12006495	88576276	tier1	In-frame	5877	non-validated	0.39062
THCA	TCGA-ET-A39L-01A	TCGA-ET-A39L	RBPMS\|NTRK3	RBPMS	NTRK3	8	15	1	-1	78	42	38	0.004	30361953	88576276	tier1	In-frame	14495	NA	0
PRAD	TCGA-HC-7821-01A	TCGA-HC-7821	ARID1A\|SEC11A	ARID1A	SEC11A	1	15	1	-1	7	5	5	0.42	27094490	85234875	tier1	In-frame	1344	NA	0.36438
STAD	TCGA-BR-8286-01A	TCGA-BR-8286	ANKS3\|GLYR1	ANKS3	GLYR1	16	16	-1	-1	2	10	8	0.008	4774751	4882913	tier2	Out-of-frame	1009	NA	0.34204
STAD	TCGA-CG-4477-01A	TCGA-CG-4477	VPS8\|GLYR1	VPS8	GLYR1	3	16	1	-1	3	8	7	0.68	184530013	4882913	tier1	5UTR-CDS	19677	NA	0
BRCA	TCGA-E9-A54Y-01A	TCGA-E9-A54Y	GINS4\|UQCRC2	GINS4	UQCRC2	8	16	1	1	25	31	31	0.36	41387817	21994409	tier1	In-frame	7071	NA	0.35659
PRAD	TCGA-ZG-A9LZ-01A	TCGA-ZG-A9LZ	MIER3\|ABCC12	MIER3	ABCC12	5	16	-1	-1	5	3	3	0.96	56229074	48130843	tier1	CDS-3UTR	10367	NA	0.3486
BLCA	TCGA-GC-A3YS-01A	TCGA-GC-A3YS	NFAT5\|CHST4	NFAT5	CHST4	16	16	1	1	11	11	11	0.09	69600277	71570563	tier1	CDS-5UTR	11435	NA	0.36442
BRCA	TCGA-A2-A0CU-01A	TCGA-A2-A0CU	SNTB2\|CHST4	SNTB2	CHST4	16	16	1	1	2	1	1	0.76	69294163	71570563	tier2	CDS-5UTR	16514	NA	0
BRCA	TCGA-A2-A04P-01A	TCGA-A2-A04P	IPO8\|CDH13	IPO8	CDH13	12	16	-1	1	33	20	3	0.12	30809618	83214475	tier1	Out-of-frame	8302	non-validated	0.36568
LUSC	TCGA-43-A56U-01A	TCGA-43-A56U	USP10\|CDH13	USP10	CDH13	16	16	1	1	24	32	28	0.27	84767109	83781713	tier4	NA	19302	NA	0
STAD	TCGA-BR-8590-01A	TCGA-BR-8590	KIAA0182\|CDH13	KIAA0182	CDH13	16	16	1	1	3	38	36	0.17	85647004	83520082	tier1	NA	8740	NA	0.37063
STAD	TCGA-CG-4449-01A	TCGA-CG-4449	USP10\|CDH13	USP10	CDH13	16	16	1	1	13	2	2	0.27	84733717	83781713	tier1	NA	19303	NA	0
OV	TCGA-04-1517-01A	TCGA-04-1517	FAM38A\|GALNS	FAM38A	GALNS	16	16	-1	-1	31	7	5	0.66	88815792	88880933	tier1	Out-of-frame	6168	NA	0.34107
UCEC	TCGA-AJ-A3EM-01A	TCGA-AJ-A3EM	FAM38A\|GALNS	FAM38A	GALNS	16	16	-1	-1	17	43	38	0.66	88851309	88893246	tier1	Out-of-frame	6169	NA	0.34107
BRCA	TCGA-A8-A09Q-01A	TCGA-A8-A09Q	AGPAT3\|KSR1	AGPAT3	KSR1	21	17	1	1	9	22	21	0.11	45323900	25915501	tier1	5UTR-CDS	654	NA	0.36138

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