TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
SARC	TCGA-DX-A8BX-01A	TCGA-DX-A8BX	ZFPM2\|SLC27A2	ZFPM2	SLC27A2	8	15	1	1	12	16	15	1.4	106331209	50489697	tier1	In-frame	20288	NA	0
SKCM	TCGA-ER-A19T-01A	TCGA-ER-A19T	GAB2\|FGF7	GAB2	FGF7	11	15	-1	1	124	105	100	0.34	77961203	49716229	tier1	CDS-5UTR	6882	non-validated	0.38854
BRCA	TCGA-E2-A10C-01A	TCGA-E2-A10C	EPB41L1\|BCL2A1	EPB41L1	BCL2A1	20	15	1	-1	2	2	2	3.7	34709738	80253516	tier4	5UTR-CDS	5636	NA	0.36755
KIRC	TCGA-B0-4700-01A	TCGA-B0-4700	MTHFS\|BCL2A1	MTHFS	BCL2A1	15	15	-1	-1	6	5	3	100	80181435	80253516	tier1	Out-of-frame	10800	NA	0.34845
LIHC	TCGA-DD-A73G-01A	TCGA-DD-A73G	MTHFS\|BCL2A1	MTHFS	BCL2A1	15	15	-1	-1	35	79	69	100	80181435	80253516	tier1	Out-of-frame	10801	NA	0.34845
LIHC	TCGA-DD-AAD6-01A	TCGA-DD-AAD6	MTHFS\|BCL2A1	MTHFS	BCL2A1	15	15	-1	-1	20	31	27	100	80181435	80253516	tier1	Out-of-frame	10802	NA	0.34845
BRCA	TCGA-GM-A2DK-01A	TCGA-GM-A2DK	AKAP13\|IGF1R	AKAP13	IGF1R	15	15	1	1	3	3	3	0.038	85924029	99250791	tier1	5UTR-CDS	729	NA	0.39378
BLCA	TCGA-GV-A40E-01A	TCGA-GV-A40E	MGAT5B\|CYP11A1	MGAT5B	CYP11A1	17	15	1	-1	11	17	14	0.025	74878380	74640396	tier1	In-frame	10319	NA	0.35692
UCS	TCGA-N5-A4RA-01A	TCGA-N5-A4RA	SLMAP\|CYP11A1	SLMAP	CYP11A1	3	15	1	-1	6	8	8	1.7	57743576	74640396	tier1	Out-of-frame	16324	NA	0
PRAD	TCGA-J4-A83I-01A	TCGA-J4-A83I	PARD3\|ADAMTS17	PARD3	ADAMTS17	10	15	-1	-1	7	12	11	1.3	34985246	100537794	tier2	Out-of-frame	12265	NA	0.38175
SARC	TCGA-X6-A8C3-01A	TCGA-X6-A8C3	RFX7\|PCSK6	RFX7	PCSK6	15	15	-1	-1	4	2	2	0.31	56535323	101872236	tier1	Out-of-frame	14619	NA	0
LGG	TCGA-HT-A614-01A	TCGA-HT-A614	RGMA\|RHCG	RGMA	RHCG	15	15	-1	-1	3	1	1	0.064	93632148	90026448	tier4	In-frame	14631	NA	0
BRCA	TCGA-AO-A03U-01B	TCGA-AO-A03U	ETV6\|NTRK3	ETV6	NTRK3	12	15	1	-1	52	42	40	5.5	12022903	88483984	tier1	In-frame	5868	NA	0.39062
COAD	TCGA-CK-5913-01A	TCGA-CK-5913	ETV6\|NTRK3	ETV6	NTRK3	12	15	1	-1	26	26	20	5.5	12022903	88483984	tier1	In-frame	5870	NA	0.39062
COAD	TCGA-CK-5916-01A	TCGA-CK-5916	ETV6\|NTRK3	ETV6	NTRK3	12	15	1	-1	12	8	8	5.5	12022903	88483984	tier1	In-frame	5871	NA	0.39062
COAD	TCGA-A6-2674-01A	TCGA-A6-2674	VPS18\|NTRK3	VPS18	NTRK3	15	15	1	-1	6	5	5	2.8	41193212	88423659	tier1	In-frame	19636	NA	0
LGG	TCGA-DB-5277-01A	TCGA-DB-5277	AKAP13\|NTRK3	AKAP13	NTRK3	15	15	1	-1	5	2	2	0.78	86213061	88576276	tier1	In-frame	733	NA	0.39386
PAAD	TCGA-FB-AAPP-01A	TCGA-FB-AAPP	EML4\|NTRK3	EML4	NTRK3	2	15	1	-1	20	10	10	0.093	42491871	88576276	tier1	In-frame	5568	NA	0.38997
SKCM	TCGA-EB-A51B-01A	TCGA-EB-A51B	ETV6\|NTRK3	ETV6	NTRK3	12	15	1	-1	18	17	14	5.5	12022903	88483984	tier1	In-frame	5875	NA	0.39062
THCA	TCGA-CE-A27D-01A	TCGA-CE-A27D	ETV6\|NTRK3	ETV6	NTRK3	12	15	1	-1	33	12	10	5.5	12006495	88576276	tier1	In-frame	5869	NA	0.39062

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