Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-DX-A1KZ-01A | TCGA-DX-A1KZ | WBP11|LGR5 | WBP11 | LGR5 | 12 | 12 | -1 | 1 | 10 | 26 | 21 | 0.45 | 14956286 | 71898394 | tier1 | 5UTR-CDS | 19740 | NA | 0 |
| SARC | TCGA-DX-A1KZ-01A | TCGA-DX-A1KZ | ZFP41|LGR5 | ZFP41 | LGR5 | 8 | 12 | 1 | 1 | 7 | 1 | 1 | 0.79 | 144329312 | 71946853 | tier4 | 5UTR-CDS | 20273 | NA | 0 |
| MESO | TCGA-UD-AAC4-01A | TCGA-UD-AAC4 | ANKS1B|PTPRQ | ANKS1B | PTPRQ | 12 | 12 | -1 | 1 | 2 | 3 | 2 | 0.29 | 100377882 | 80981908 | tier2 | 5UTR-CDS | 1006 | NA | 0.37119 |
| SARC | TCGA-DX-AB35-01A | TCGA-DX-AB35 | C12orf26|PTPRQ | C12orf26 | PTPRQ | 12 | 12 | 1 | 1 | 3 | 3 | 3 | 0.044 | 82796909 | 81025971 | tier1 | In-frame | 2410 | NA | 0 |
| SARC | TCGA-FX-A3NK-01A | TCGA-FX-A3NK | FRS2|PTPRQ | FRS2 | PTPRQ | 12 | 12 | 1 | 1 | 152 | 44 | 39 | 0.042 | 69864310 | 81072381 | tier1 | 5UTR-CDS | 6778 | NA | 0.37681 |
| SARC | TCGA-FX-A3NK-01A | TCGA-FX-A3NK | OSBPL8|PTPRQ | OSBPL8 | PTPRQ | 12 | 12 | -1 | 1 | 16 | 13 | 8 | 0.15 | 76844631 | 80998838 | tier1 | In-frame | 12089 | NA | 0.34869 |
| SKCM | TCGA-D3-A3BZ-06A | TCGA-D3-A3BZ | RBM19|PTPRQ | RBM19 | PTPRQ | 12 | 12 | -1 | 1 | 79 | 64 | 58 | 0.33 | 114352774 | 80981908 | tier1 | Out-of-frame | 14451 | NA | 0 |
| SARC | TCGA-DX-A6YS-01A | TCGA-DX-A6YS | CCDC73|SLC15A4 | CCDC73 | SLC15A4 | 11 | 12 | -1 | -1 | 3 | 1 | 1 | 0.01 | 32815895 | 129283962 | tier2 | 5UTR-CDS | 3179 | NA | 0.34695 |
| BRCA | TCGA-C8-A12M-01A | TCGA-C8-A12M | ZMYM2|MTMR6 | ZMYM2 | MTMR6 | 13 | 13 | 1 | -1 | 2 | 11 | 11 | 0.17 | 20534166 | 25842079 | tier2 | 5UTR-CDS | 20332 | NA | 0 |
| READ | TCGA-F5-6571-01A | TCGA-F5-6571 | PAN3|MTMR6 | PAN3 | MTMR6 | 13 | 13 | 1 | -1 | 8 | 5 | 5 | 1 | 28771483 | 25802719 | tier1 | In-frame | 12234 | NA | 0.34583 |
| HNSC | TCGA-D6-6827-01A | TCGA-D6-6827 | KPNA3|SLC7A1 | KPNA3 | SLC7A1 | 13 | 13 | -1 | -1 | 2 | 2 | 2 | 0.095 | 50285027 | 30107119 | tier2 | Out-of-frame | 9102 | NA | 0.36585 |
| LUSC | TCGA-77-8007-01A | TCGA-77-8007 | SUPT5H|ACVRL1 | SUPT5H | ACVRL1 | 19 | 12 | 1 | 1 | 2 | 6 | 5 | 0.16 | 39967306 | 52306155 | tier3 | 3UTR-5UTR | 17188 | NA | 0 |
| SARC | TCGA-DX-A3LY-01B | TCGA-DX-A3LY | ARHGDIA|ACVRL1 | ARHGDIA | ACVRL1 | 17 | 12 | -1 | 1 | 2 | 11 | 4 | 0.026 | 79825598 | 52306155 | tier2 | 3UTR-5UTR | 1268 | non-validated | 0.3849 |
| SARC | TCGA-DX-AB2G-01A | TCGA-DX-AB2G | SP1|NPFF | SP1 | NPFF | 12 | 12 | 1 | -1 | 76 | 91 | 81 | 1.9 | 53777406 | 53900926 | tier1 | Out-of-frame | 16633 | NA | 0 |
| BLCA | TCGA-DK-AA6P-01A | TCGA-DK-AA6P | RPL41|SMARCC2 | RPL41 | SMARCC2 | 12 | 12 | 1 | -1 | 7 | 186 | 1 | 100 | 56510583 | 56580024 | tier2 | In-frame | 14998 | NA | 0 |
| STAD | TCGA-BR-8060-01A | TCGA-BR-8060 | DNAJC14|SMARCC2 | DNAJC14 | SMARCC2 | 12 | 12 | -1 | -1 | 24 | 57 | 53 | 1.8 | 56216854 | 56568548 | tier1 | In-frame | 4932 | NA | 0.3735 |
| UCEC | TCGA-EY-A3QX-01A | TCGA-EY-A3QX | MYL6|SMARCC2 | MYL6 | SMARCC2 | 12 | 12 | 1 | -1 | 4 | 2 | 2 | 0.76 | 56556115 | 56561978 | tier1 | 3UTR-CDS | 10925 | NA | 0.37789 |
| SARC | TCGA-DX-A1KZ-01A | TCGA-DX-A1KZ | TEAD4|MAP3K12 | TEAD4 | MAP3K12 | 12 | 12 | 1 | -1 | 18 | 6 | 5 | 0.21 | 3069206 | 53880929 | tier1 | 5UTR-CDS | 17643 | NA | 0 |
| BLCA | TCGA-E7-A7PW-01A | TCGA-E7-A7PW | PCBP2|ITGB7 | PCBP2 | ITGB7 | 12 | 12 | 1 | -1 | 29 | 554 | 506 | 1.1 | 53865591 | 53585420 | tier1 | CDS-3UTR | 12368 | NA | 0.37564 |
| STAD | TCGA-FP-8631-01A | TCGA-FP-8631 | RAP1B|CSAD | RAP1B | CSAD | 12 | 12 | 1 | -1 | 2 | 6 | 6 | 2.4 | 69004832 | 53555173 | tier2 | 5UTR-CDS | 14270 | NA | 0 |
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