Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-HC-7209-01A | TCGA-HC-7209 | RNF144B|PPP3CA | RNF144B | PPP3CA | 6 | 4 | 1 | -1 | 578 | 568 | 531 | 0.24 | 18399930 | 102117273 | tier1 | Out-of-frame | 14771 | NA | 0 |
| SKCM | TCGA-D3-A51N-06A | TCGA-D3-A51N | FAM114A2|FBN2 | FAM114A2 | FBN2 | 5 | 5 | -1 | -1 | 6 | 4 | 3 | 0.042 | 153413351 | 127609660 | tier1 | In-frame | 6015 | NA | 0.36022 |
| PRAD | TCGA-J4-AATZ-01A | TCGA-J4-AATZ | ETV6|PDE6H | ETV6 | PDE6H | 12 | 12 | 1 | 1 | 75 | 70 | 65 | 100 | 11803094 | 15130906 | tier1 | CDS-5UTR | 5878 | NA | 0.36814 |
| UCS | TCGA-N5-A4RO-01A | TCGA-N5-A4RO | NCKAP5L|PDE6H | NCKAP5L | PDE6H | 12 | 12 | -1 | 1 | 2 | 1 | 1 | 0.45 | 50222105 | 15130906 | tier2 | 5UTR-5UTR | 11171 | NA | 0.33036 |
| BLCA | TCGA-DK-A3IQ-01A | TCGA-DK-A3IQ | EPS8|PIK3C2G | EPS8 | PIK3C2G | 12 | 12 | -1 | 1 | 3 | 2 | 2 | 0.2 | 15942095 | 18641383 | tier1 | 5UTR-CDS | 5711 | NA | 0.37532 |
| BLCA | TCGA-XF-AAMX-01A | TCGA-XF-AAMX | PLEKHA5|PIK3C2G | PLEKHA5 | PIK3C2G | 12 | 12 | 1 | 1 | 4 | 5 | 4 | 0.32 | 19489550 | 18715637 | tier1 | Out-of-frame | 13002 | NA | 0.35795 |
| BRCA | TCGA-B6-A0IG-01A | TCGA-B6-A0IG | ERC1|PIK3C2G | ERC1 | PIK3C2G | 12 | 12 | 1 | 1 | 19 | 20 | 19 | 5.7 | 1299218 | 18641383 | tier1 | In-frame | 5750 | NA | 0.36365 |
| BRCA | TCGA-EW-A1PC-01B | TCGA-EW-A1PC | RP11-540D14.8|PIK3C2G | RP11-540D14.8 | PIK3C2G | 1 | 12 | 1 | 1 | 17 | 9 | 8 | 100 | 155057880 | 18499575 | tier1 | In-frame | 14939 | non-validated | 0 |
| SKCM | TCGA-FS-A4F9-06A | TCGA-FS-A4F9 | PARP11|PIK3C2G | PARP11 | PIK3C2G | 12 | 12 | -1 | 1 | 9 | 3 | 3 | 0.76 | 3973002 | 18793363 | tier1 | 5UTR-CDS | 12298 | NA | 0.35402 |
| BRCA | TCGA-AO-A1KQ-01A | TCGA-AO-A1KQ | CLSTN3|PLCZ1 | CLSTN3 | PLCZ1 | 12 | 12 | 1 | -1 | 2 | 2 | 2 | 0.094 | 7295907 | 18837213 | tier3 | Out-of-frame | 3857 | NA | 0.35654 |
| BRCA | TCGA-AR-A1AR-01A | TCGA-AR-A1AR | KIAA0528|PLCZ1 | KIAA0528 | PLCZ1 | 12 | 12 | -1 | -1 | 6 | 4 | 4 | 0.028 | 22635491 | 18890443 | tier2 | CDS-5UTR | 8792 | NA | 0.35145 |
| LGG | TCGA-HT-7884-01B | TCGA-HT-7884 | DENND5B|PLCZ1 | DENND5B | PLCZ1 | 12 | 12 | -1 | -1 | 2 | 2 | 2 | 2.5 | 31648744 | 18890443 | tier4 | CDS-5UTR | 4717 | NA | 0.34905 |
| LUSC | TCGA-37-3792-01A | TCGA-37-3792 | RAD51AP1|SLCO1C1 | RAD51AP1 | SLCO1C1 | 12 | 12 | 1 | 1 | 92 | 58 | 52 | 0.022 | 4653070 | 20890041 | tier1 | In-frame | 14164 | NA | 0 |
| LUAD | TCGA-64-5779-01A | TCGA-64-5779 | FAM60A|CD27 | FAM60A | CD27 | 12 | 12 | -1 | 1 | 41 | 10 | 6 | 0.012 | 31478958 | 6554590 | tier1 | 5UTR-CDS | 6196 | NA | 0.35785 |
| SARC | TCGA-X6-A8C6-01A | TCGA-X6-A8C6 | C15orf24|CD27 | C15orf24 | CD27 | 15 | 12 | -1 | 1 | 13 | 13 | 13 | 100 | 34388096 | 6554590 | tier1 | Out-of-frame | 2467 | NA | 0 |
| SARC | TCGA-DX-A7EI-01A | TCGA-DX-A7EI | PRICKLE1|LRIG3 | PRICKLE1 | LRIG3 | 12 | 12 | -1 | -1 | 49 | 78 | 66 | 0.62 | 42983267 | 59284578 | tier1 | 5UTR-CDS | 13516 | NA | 0.35417 |
| CESC | TCGA-FU-A3TX-01A | TCGA-FU-A3TX | DOCK4|TPH2 | DOCK4 | TPH2 | 7 | 12 | -1 | 1 | 6 | 3 | 2 | 0.86 | 111846157 | 72366299 | tier1 | Out-of-frame | 5039 | NA | 0.35965 |
| SARC | TCGA-DX-A3U6-01A | TCGA-DX-A3U6 | DNM3|TPH2 | DNM3 | TPH2 | 1 | 12 | 1 | 1 | 22 | 15 | 15 | 0.067 | 172222822 | 72388219 | tier1 | In-frame | 4996 | validated | 0.36237 |
| GBM | TCGA-06-0129-01A | TCGA-06-0129 | KIAA1033|LGR5 | KIAA1033 | LGR5 | 12 | 12 | 1 | 1 | 7 | 15 | 13 | 0.078 | 105538650 | 71928895 | tier1 | Out-of-frame | 8818 | NA | 0.34871 |
| SARC | TCGA-3R-A8YX-01A | TCGA-3R-A8YX | ARFGEF1|LGR5 | ARFGEF1 | LGR5 | 8 | 12 | -1 | 1 | 4 | 4 | 4 | 1.2 | 68163534 | 71898394 | tier1 | Out-of-frame | 1194 | NA | 0.36436 |
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