Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BLCA | TCGA-FD-A3SJ-01A | TCGA-FD-A3SJ | FAM190A|MMRN1 | FAM190A | MMRN1 | 4 | 4 | 1 | 1 | 4 | 1 | 1 | 1.1 | 91389505 | 90830427 | tier4 | In-frame | 6128 | NA | 0.3419 |
| BLCA | TCGA-H4-A2HO-01A | TCGA-H4-A2HO | FAM190A|MMRN1 | FAM190A | MMRN1 | 4 | 4 | 1 | 1 | 6 | 2 | 2 | 1.1 | 91048982 | 90830427 | tier1 | 5UTR-CDS | 6129 | NA | 0.3419 |
| BRCA | TCGA-A7-A26G-01A | TCGA-A7-A26G | FAM190A|MMRN1 | FAM190A | MMRN1 | 4 | 4 | 1 | 1 | 2 | 2 | 2 | 1.1 | 91234198 | 90844319 | tier4 | Out-of-frame | 6124 | non-validated | 0.3419 |
| BRCA | TCGA-A8-A07O-01A | TCGA-A8-A07O | FAM190A|MMRN1 | FAM190A | MMRN1 | 4 | 4 | 1 | 1 | 12 | 13 | 13 | 1.1 | 91048982 | 90872756 | tier1 | 5UTR-CDS | 6125 | NA | 0.3419 |
| BRCA | TCGA-EW-A6SA-01A | TCGA-EW-A6SA | SPATA5|MMRN1 | SPATA5 | MMRN1 | 4 | 4 | 1 | 1 | 3 | 2 | 2 | 0.62 | 123868643 | 90872756 | tier1 | In-frame | 16676 | NA | 0 |
| COAD | TCGA-A6-6649-01A | TCGA-A6-6649 | FAM190A|MMRN1 | FAM190A | MMRN1 | 4 | 4 | 1 | 1 | 3 | 1 | 1 | 1.1 | 91048982 | 90815875 | tier3 | 5UTR-5UTR | 6123 | NA | 0.3419 |
| ESCA | TCGA-L7-A6VZ-01A | TCGA-L7-A6VZ | FAM190A|MMRN1 | FAM190A | MMRN1 | 4 | 4 | 1 | 1 | 2 | 11 | 9 | 1.1 | 91048982 | 90844319 | tier2 | 5UTR-CDS | 6130 | validated | 0.3419 |
| LUAD | TCGA-05-4420-01A | TCGA-05-4420 | FAM190A|MMRN1 | FAM190A | MMRN1 | 4 | 4 | 1 | 1 | 3 | 5 | 5 | 1.1 | 91048982 | 90848946 | tier1 | 5UTR-CDS | 6121 | non-validated | 0.3419 |
| LUSC | TCGA-46-3768-01A | TCGA-46-3768 | FAM190A|MMRN1 | FAM190A | MMRN1 | 4 | 4 | 1 | 1 | 14 | 2 | 2 | 1.1 | 91048982 | 90830427 | tier1 | 5UTR-CDS | 6122 | NA | 0.3419 |
| PRAD | TCGA-EJ-A65J-01A | TCGA-EJ-A65J | FAM190A|MMRN1 | FAM190A | MMRN1 | 4 | 4 | 1 | 1 | 2 | 4 | 4 | 1.1 | 91645142 | 90815875 | tier2 | CDS-5UTR | 6127 | NA | 0.3419 |
| SKCM | TCGA-RP-A6K9-06A | TCGA-RP-A6K9 | FAM190A|MMRN1 | FAM190A | MMRN1 | 4 | 4 | 1 | 1 | 2 | 1 | 1 | 1.1 | 91048982 | 90815875 | tier3 | 5UTR-5UTR | 6131 | NA | 0.3419 |
| UCEC | TCGA-AJ-A23N-01A | TCGA-AJ-A23N | FAM190A|MMRN1 | FAM190A | MMRN1 | 4 | 4 | 1 | 1 | 17 | 7 | 4 | 1.1 | 91048982 | 90815875 | tier1 | 5UTR-5UTR | 6126 | NA | 0.3419 |
| BLCA | TCGA-BT-A2LD-01A | TCGA-BT-A2LD | RBM39|PRDM5 | RBM39 | PRDM5 | 20 | 4 | -1 | -1 | 4 | 6 | 6 | 1.9 | 34329863 | 121742500 | tier1 | 5UTR-CDS | 14471 | NA | 0 |
| LUAD | TCGA-44-7660-01A | TCGA-44-7660 | G3BP2|NAAA | G3BP2 | NAAA | 4 | 4 | -1 | -1 | 7 | 5 | 5 | 0.33 | 76598392 | 76841128 | tier1 | 5UTR-CDS | 6877 | NA | 0.36739 |
| CESC | TCGA-FU-A23L-01A | TCGA-FU-A23L | SDAD1|CXCL9 | SDAD1 | CXCL9 | 4 | 4 | -1 | -1 | 6 | 3 | 2 | 3.6 | 76902525 | 76927427 | tier1 | Out-of-frame | 15458 | NA | 0 |
| BLCA | TCGA-LT-A5Z6-01A | TCGA-LT-A5Z6 | FAM190A|BMP2K | FAM190A | BMP2K | 4 | 4 | 1 | 1 | 10 | 9 | 9 | 0.41 | 91321280 | 79754736 | tier1 | Out-of-frame | 6119 | NA | 0.36605 |
| PRAD | TCGA-VP-A87K-01A | TCGA-VP-A87K | AL359075.1|EGF | AL359075.1 | EGF | 1 | 4 | -1 | 1 | 4 | 4 | 3 | 0.91 | 177927267 | 110914403 | tier1 | Out-of-frame | 778 | NA | 0.37725 |
| BRCA | TCGA-AO-A12D-01A | TCGA-AO-A12D | C4orf14|PPP3CA | C4orf14 | PPP3CA | 4 | 4 | -1 | -1 | 2 | 3 | 3 | 0.047 | 57832786 | 102117273 | tier2 | Out-of-frame | 2723 | NA | 0 |
| PRAD | TCGA-VN-A88L-01A | TCGA-VN-A88L | CANT1|PPP3CA | CANT1 | PPP3CA | 17 | 4 | -1 | -1 | 2 | 19 | 7 | 0.59 | 76987799 | 102269435 | tier3 | NA | 2950 | NA | 0.3667 |
| PRAD | TCGA-CH-5761-01A | TCGA-CH-5761 | RASSF3|PPP3CA | RASSF3 | PPP3CA | 12 | 4 | 1 | -1 | 2 | 10 | 4 | 0.58 | 65091347 | 102269435 | tier3 | NA | 14381 | NA | 0 |
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