Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-AR-A1AR-01A | TCGA-AR-A1AR | FUBP1|SLC44A5 | FUBP1 | SLC44A5 | 1 | 1 | -1 | -1 | 3 | 6 | 6 | 1.4 | 78444569 | 75766370 | tier1 | Out-of-frame | 6823 | NA | 0.36536 |
| OV | TCGA-59-A5PD-01A | TCGA-59-A5PD | KIF3C|ADCY3 | KIF3C | ADCY3 | 2 | 2 | -1 | -1 | 6 | 19 | 16 | 0.28 | 26203242 | 25095588 | tier1 | In-frame | 9005 | NA | 0.36747 |
| UCS | TCGA-N8-A56S-01A | TCGA-N8-A56S | ZHX2|PPM1B | ZHX2 | PPM1B | 8 | 2 | 1 | 1 | 6 | 7 | 7 | 0.64 | 123794185 | 44428325 | tier1 | 5UTR-5UTR | 20308 | NA | 0 |
| PRAD | TCGA-HC-7738-01A | TCGA-HC-7738 | JTB|CYP1B1 | JTB | CYP1B1 | 1 | 2 | -1 | -1 | 2 | 2 | 1 | 100 | 153946988 | 38303323 | tier4 | 3UTR-5UTR | 8503 | NA | 0.35271 |
| KIRP | TCGA-G7-6792-01A | TCGA-G7-6792 | TSSC1|SLC5A6 | TSSC1 | SLC5A6 | 2 | 2 | -1 | -1 | 3 | 2 | 1 | 0.72 | 3341788 | 27434401 | tier2 | CDS-5UTR | 18822 | NA | 0 |
| BRCA | TCGA-A2-A04U-01A | TCGA-A2-A04U | MSH2|SLC3A1 | MSH2 | SLC3A1 | 2 | 2 | 1 | 1 | 19 | 13 | 12 | 0.11 | 47637511 | 44539725 | tier1 | In-frame | 10700 | NA | 0.36673 |
| LUSC | TCGA-39-5040-01A | TCGA-39-5040 | STAU1|PLCE1 | STAU1 | PLCE1 | 20 | 10 | -1 | 1 | 31 | 27 | 25 | 0.29 | 47804653 | 95790440 | tier1 | 5UTR-5UTR | 17025 | NA | 0 |
| LUAD | TCGA-MN-A4N5-01A | TCGA-MN-A4N5 | AMMECR1|PLA2G12B | AMMECR1 | PLA2G12B | X | 10 | -1 | -1 | 4 | 2 | 1 | 0.22 | 109507717 | 74702498 | tier2 | Out-of-frame | 875 | NA | 0.3308 |
| UCS | TCGA-N6-A4VG-01A | TCGA-N6-A4VG | MICU1|PLA2G12B | MICU1 | PLA2G12B | 10 | 10 | -1 | -1 | 7 | 2 | 1 | 0.008 | 74182992 | 74701092 | tier2 | In-frame | 10356 | NA | 0.32657 |
| ACC | TCGA-OR-A5J7-01A | TCGA-OR-A5J7 | CCAR1|TET1 | CCAR1 | TET1 | 10 | 10 | 1 | 1 | 4 | 3 | 3 | 0.003 | 70520949 | 70432652 | tier1 | Out-of-frame | 3101 | NA | 0.36033 |
| UCEC | TCGA-PG-A5BC-01A | TCGA-PG-A5BC | CCAR1|TET1 | CCAR1 | TET1 | 10 | 10 | 1 | 1 | 3 | 3 | 3 | 0.003 | 70517134 | 70432652 | tier2 | Out-of-frame | 3102 | NA | 0.36033 |
| BRCA | TCGA-BH-A1F0-01A | TCGA-BH-A1F0 | FAM117B|ATIC | FAM117B | ATIC | 2 | 2 | 1 | 1 | 10 | 6 | 4 | 0.011 | 203500511 | 216177221 | tier1 | In-frame | 6017 | NA | 0.35254 |
| HNSC | TCGA-CV-7261-01A | TCGA-CV-7261 | GOLIM4|SLC40A1 | GOLIM4 | SLC40A1 | 3 | 2 | -1 | -1 | 39 | 46 | 44 | 0.044 | 167742314 | 190440046 | tier1 | In-frame | 7279 | NA | 0.33755 |
| UVM | TCGA-V4-A9EK-01A | TCGA-V4-A9EK | PARD3B|SLC40A1 | PARD3B | SLC40A1 | 2 | 2 | 1 | -1 | 3 | 1 | 1 | 1 | 205410842 | 190448146 | tier2 | NA | 12281 | NA | 0.36621 |
| PRAD | TCGA-HC-7230-01A | TCGA-HC-7230 | WDR52|SLC35A5 | WDR52 | SLC35A5 | 3 | 3 | -1 | 1 | 2 | 1 | 1 | 1.6 | 113135372 | 112299393 | tier2 | Out-of-frame | 19783 | NA | 0 |
| MESO | TCGA-3U-A98F-01A | TCGA-3U-A98F | CPNE8|CILP | CPNE8 | CILP | 12 | 15 | -1 | -1 | 2 | 1 | 1 | 1.9 | 39170040 | 65496920 | tier2 | Out-of-frame | 4136 | NA | 0.35292 |
| COAD | TCGA-F4-6461-01A | TCGA-F4-6461 | SIN3A|SEMA7A | SIN3A | SEMA7A | 15 | 15 | -1 | -1 | 5 | 3 | 2 | 0.23 | 75743764 | 74711293 | tier1 | 5UTR-CDS | 15936 | NA | 0 |
| MESO | TCGA-TS-A8AF-01A | TCGA-TS-A8AF | HNRNPD|PRKG2 | HNRNPD | PRKG2 | 4 | 4 | -1 | -1 | 10 | 9 | 8 | 0.11 | 83292681 | 82031765 | tier1 | Out-of-frame | 7891 | NA | 0.38862 |
| BLCA | TCGA-E5-A2PC-01A | TCGA-E5-A2PC | KPNA3|FGF2 | KPNA3 | FGF2 | 13 | 4 | -1 | 1 | 131 | 56 | 53 | 1.1 | 50321085 | 123797476 | tier1 | NA | 9098 | NA | 0.37995 |
| LUAD | TCGA-44-7670-01A | TCGA-44-7670 | NSUN4|BMPR1B | NSUN4 | BMPR1B | 1 | 4 | 1 | 1 | 3 | 1 | 1 | 1.5 | 46810816 | 96044961 | tier3 | Out-of-frame | 11814 | NA | 0.38109 |
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