TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
BRCA	TCGA-E2-A14Y-01A	TCGA-E2-A14Y	NKAIN3\|SLCO5A1	NKAIN3	SLCO5A1	8	8	1	-1	2	3	3	0.27	63659688	70650439	tier2	Out-of-frame	11582	NA	0.3427
SARC	TCGA-3B-A9HL-01A	TCGA-3B-A9HL	SEC16A\|SLCO5A1	SEC16A	SLCO5A1	9	8	-1	-1	2	1	1	0.34	139353586	70650439	tier2	Out-of-frame	15500	NA	0
SKCM	TCGA-EE-A2MH-06A	TCGA-EE-A2MH	PCMTD1\|SLCO5A1	PCMTD1	SLCO5A1	8	8	-1	-1	4	4	3	0.57	52758221	70674110	tier1	Out-of-frame	12413	NA	0.33541
KIRP	TCGA-G7-6793-01A	TCGA-G7-6793	SH3RF1\|NEK1	SH3RF1	NEK1	4	4	-1	-1	5	6	6	0.087	170037420	170327898	tier1	In-frame	15841	NA	0
PAAD	TCGA-2J-AABP-01A	TCGA-2J-AABP	TTC17\|TMPRSS4	TTC17	TMPRSS4	11	11	1	1	2	1	1	0.006	43411371	117983984	tier3	In-frame	18829	NA	0
PRAD	TCGA-EJ-8470-01A	TCGA-EJ-8470	AMBRA1\|TRPC6	AMBRA1	TRPC6	11	11	-1	-1	14	8	7	0.25	46615378	101375529	tier1	5UTR-CDS	870	NA	0.37995
SARC	TCGA-DX-A23T-01A	TCGA-DX-A23T	GBF1\|TRPC6	GBF1	TRPC6	10	11	1	-1	26	33	29	1.1	104005538	101375529	tier1	5UTR-CDS	7005	NA	0.37874
SARC	TCGA-DX-A2J1-01A	TCGA-DX-A2J1	ZDHHC17\|MMP27	ZDHHC17	MMP27	12	11	1	-1	16	14	12	1.2	77158592	102573849	tier1	NA	20204	NA	0
CESC	TCGA-RA-A741-01A	TCGA-RA-A741	PIAS1\|MAP2K5	PIAS1	MAP2K5	15	15	1	1	3	1	1	0.85	68379088	67984817	tier4	In-frame	12791	NA	0.39512
READ	TCGA-DC-6683-01A	TCGA-DC-6683	INADL\|MAP2K5	INADL	MAP2K5	1	15	1	1	27	42	39	2.5	62274202	68040569	tier1	In-frame	8224	NA	0.39372
STAD	TCGA-HU-A4GF-01A	TCGA-HU-A4GF	SNRNP40\|MAP2K5	SNRNP40	MAP2K5	1	15	-1	1	5	75	70	0.13	31762101	68040569	tier1	In-frame	16500	NA	0
HNSC	TCGA-CN-4742-01A	TCGA-CN-4742	DHCR24\|THBS1	DHCR24	THBS1	1	15	-1	1	2	1	1	0.32	55315306	39873127	tier3	3UTR-5UTR	4781	NA	0.37574
HNSC	TCGA-CV-7255-01A	TCGA-CV-7255	DHCR24\|THBS1	DHCR24	THBS1	1	15	-1	1	2	2	2	0.32	55315306	39873127	tier3	3UTR-5UTR	4782	non-validated	0.37574
CESC	TCGA-C5-A7X3-01A	TCGA-C5-A7X3	MCTP2\|PARP6	MCTP2	PARP6	15	15	1	-1	3	3	3	0.73	94901841	72563628	tier1	CDS-5UTR	10108	NA	0.34205
UCEC	TCGA-AX-A3G4-01A	TCGA-AX-A3G4	MYO9A\|PARP6	MYO9A	PARP6	15	15	-1	-1	113	71	65	0.029	72410021	72535040	tier1	5UTR-CDS	11014	NA	0.36475
COAD	TCGA-AM-5820-01A	TCGA-AM-5820	CHCHD3\|ITPKA	CHCHD3	ITPKA	7	15	-1	1	9	21	14	1.3	132659929	41794600	tier1	In-frame	3604	NA	0.37198
PRAD	TCGA-V1-A9ZG-01A	TCGA-V1-A9ZG	ATXN2\|ADAM10	ATXN2	ADAM10	12	15	-1	-1	2	2	2	0.84	111947353	58974513	tier3	Out-of-frame	1811	NA	0.37226
BRCA	TCGA-A8-A07G-01A	TCGA-A8-A07G	UBE3A\|CYP19A1	UBE3A	CYP19A1	15	15	-1	-1	6	8	8	0.067	25650608	51535147	tier1	CDS-5UTR	19103	NA	0
LIHC	TCGA-BC-A10Z-01A	TCGA-BC-A10Z	COMMD9\|CYP19A1	COMMD9	CYP19A1	11	15	-1	-1	3	18	14	3.3	36310912	51535147	tier1	CDS-5UTR	4058	NA	0.36082
BRCA	TCGA-AC-A3QQ-01A	TCGA-AC-A3QQ	MSH4\|RABGGTB	MSH4	RABGGTB	1	1	1	1	2	2	2	0.6	76288266	76260898	tier4	Out-of-frame	10706	NA	0.36634

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