Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| THCA | TCGA-CE-A484-01A | TCGA-CE-A484 | RBM28|AOAH | RBM28 | AOAH | 7 | 7 | -1 | -1 | 4 | 3 | 3 | 3 | 127957712 | 36634036 | tier1 | In-frame | 14457 | NA | 0 |
| PCPG | TCGA-QR-A6GS-01A | TCGA-QR-A6GS | DCAKD|ADAMTS7 | DCAKD | ADAMTS7 | 17 | 15 | -1 | -1 | 4 | 5 | 5 | 0.003 | 43128921 | 79083565 | tier1 | 5UTR-CDS | 4588 | NA | 0.35253 |
| BRCA | TCGA-E2-A1LE-01A | TCGA-E2-A1LE | ITSN2|NMT1 | ITSN2 | NMT1 | 2 | 17 | -1 | 1 | 5 | 3 | 3 | 0.026 | 24468998 | 43171053 | tier1 | In-frame | 8466 | NA | 0.37641 |
| SKCM | TCGA-ER-A19T-01A | TCGA-ER-A19T | TMEM106A|NMT1 | TMEM106A | NMT1 | 17 | 17 | 1 | 1 | 2 | 1 | 1 | 0.14 | 41365910 | 43173562 | tier4 | Out-of-frame | 17927 | non-validated | 0 |
| BRCA | TCGA-E2-A14P-01A | TCGA-E2-A14P | BCAS3|GH2 | BCAS3 | GH2 | 17 | 17 | 1 | -1 | 7 | 3 | 1 | 0.14 | 59161925 | 61958879 | tier3 | In-frame | 1979 | non-validated | 0.35497 |
| BRCA | TCGA-AR-A250-01A | TCGA-AR-A250 | BCAS3|KAT7 | BCAS3 | KAT7 | 17 | 17 | 1 | 1 | 6 | 5 | 4 | 0.042 | 59161925 | 47893165 | tier1 | Out-of-frame | 1983 | NA | 0.33323 |
| LGG | TCGA-FG-8189-01B | TCGA-FG-8189 | CKB|SCN2A | CKB | SCN2A | 14 | 2 | -1 | 1 | 2 | 39 | 27 | 0.53 | 103986004 | 166150541 | tier3 | 3UTR-5UTR | 3749 | NA | 0.35477 |
| LGG | TCGA-HT-8107-01A | TCGA-HT-8107 | EPB49|SCN2A | EPB49 | SCN2A | 8 | 2 | 1 | 1 | 2 | 16 | 6 | 0.87 | 21940035 | 166150541 | tier3 | 3UTR-5UTR | 5657 | NA | 0.36268 |
| ACC | TCGA-OR-A5JY-01A | TCGA-OR-A5JY | PKIB|BLK | PKIB | BLK | 6 | 8 | 1 | 1 | 10 | 1 | 1 | 0.17 | 122954512 | 11418811 | tier2 | 5UTR-CDS | 12907 | NA | 0.38404 |
| PRAD | TCGA-CH-5790-01A | TCGA-CH-5790 | RCOR3|RPS6KC1 | RCOR3 | RPS6KC1 | 1 | 1 | 1 | 1 | 3 | 1 | 1 | 0.83 | 211477482 | 213341201 | tier4 | In-frame | 14522 | NA | 0 |
| BRCA | TCGA-D8-A1XJ-01A | TCGA-D8-A1XJ | PUM2|IL1RN | PUM2 | IL1RN | 2 | 2 | -1 | 1 | 3 | 5 | 4 | 0.12 | 20478344 | 113868693 | tier1 | CDS-5UTR | 13961 | NA | 0 |
| LGG | TCGA-TQ-A7RH-01A | TCGA-TQ-A7RH | DOCK10|IL1RN | DOCK10 | IL1RN | 2 | 2 | -1 | 1 | 7 | 7 | 7 | 0.14 | 225796266 | 113885266 | tier1 | Out-of-frame | 5027 | NA | 0.37035 |
| STAD | TCGA-BR-4357-01A | TCGA-BR-4357 | TMEM87B|IL1RN | TMEM87B | IL1RN | 2 | 2 | 1 | 1 | 6 | 4 | 4 | 0.1 | 112847295 | 113868693 | tier2 | CDS-5UTR | 18055 | NA | 0 |
| UCEC | TCGA-KP-A3W4-01A | TCGA-KP-A3W4 | C10orf46|IL1RN | C10orf46 | IL1RN | 10 | 2 | -1 | 1 | 7 | 3 | 3 | 1.6 | 120513908 | 113885266 | tier1 | 5UTR-CDS | 2327 | NA | 0 |
| PRAD | TCGA-VP-A87K-01A | TCGA-VP-A87K | FOXP1|UGGT1 | FOXP1 | UGGT1 | 3 | 2 | -1 | 1 | 9 | 7 | 6 | 0.8 | 71037145 | 128941249 | tier1 | Out-of-frame | 6698 | NA | 0.35322 |
| SARC | TCGA-DX-A6YV-01A | TCGA-DX-A6YV | ANKRD36|UGGT1 | ANKRD36 | UGGT1 | 2 | 2 | 1 | 1 | 2 | 5 | 4 | 2.5 | 97812253 | 128880760 | tier3 | In-frame | 987 | NA | 0.34663 |
| LUSC | TCGA-51-6867-01A | TCGA-51-6867 | PAG1|GAD2 | PAG1 | GAD2 | 8 | 10 | -1 | 1 | 3 | 1 | 1 | 0.022 | 81942231 | 26562565 | tier3 | 5UTR-CDS | 12190 | NA | 0.36944 |
| BRCA | TCGA-BH-A0DS-01A | TCGA-BH-A0DS | ODF2|SLC2A8 | ODF2 | SLC2A8 | 9 | 9 | 1 | 1 | 9 | 10 | 9 | 3.5 | 131250304 | 130169715 | tier1 | NA | 12003 | NA | 0.34924 |
| SKCM | TCGA-ER-A19L-06A | TCGA-ER-A19L | ZNF79|SLC2A8 | ZNF79 | SLC2A8 | 9 | 9 | 1 | 1 | 5 | 6 | 5 | 1.9 | 130198282 | 130162186 | tier1 | Out-of-frame | 20663 | non-validated | 0 |
| LGG | TCGA-E1-A7YE-01A | TCGA-E1-A7YE | ZNF618|SLC31A1 | ZNF618 | SLC31A1 | 9 | 9 | 1 | 1 | 9 | 11 | 10 | 0.036 | 116638693 | 116018394 | tier1 | CDS-5UTR | 20595 | NA | 0 |
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