Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| GBM | TCGA-06-0686-01A | TCGA-06-0686 | RAP1B|CPM | RAP1B | CPM | 12 | 12 | 1 | -1 | 16 | 97 | 83 | 0.041 | 69004823 | 69326620 | tier2 | 5UTR-5UTR | 14269 | non-validated | 0 |
| PCPG | TCGA-PR-A5PF-01A | TCGA-PR-A5PF | CCT2|CPM | CCT2 | CPM | 12 | 12 | 1 | -1 | 15 | 13 | 9 | 1.8 | 69979304 | 69252851 | tier1 | Out-of-frame | 3245 | NA | 0.36834 |
| SARC | TCGA-DX-AB36-01A | TCGA-DX-AB36 | ANO5|CPM | ANO5 | CPM | 11 | 12 | 1 | -1 | 22 | 18 | 16 | 0.45 | 22297745 | 69252851 | tier1 | Out-of-frame | 1032 | NA | 0.34747 |
| SARC | TCGA-DX-A3M1-01A | TCGA-DX-A3M1 | AUH|CPM | AUH | CPM | 9 | 12 | -1 | -1 | 3 | 5 | 3 | 0.37 | 94058303 | 69265736 | tier1 | Out-of-frame | 1821 | validated | 0.34593 |
| SARC | TCGA-DX-A6BG-01A | TCGA-DX-A6BG | C12orf26|CPM | C12orf26 | CPM | 12 | 12 | 1 | -1 | 11 | 14 | 13 | 0.5 | 82850599 | 69326620 | tier1 | CDS-5UTR | 2407 | NA | 0 |
| SARC | TCGA-DX-A3M1-01A | TCGA-DX-A3M1 | C12orf63|CPM | C12orf63 | CPM | 12 | 12 | 1 | -1 | 5 | 3 | 2 | 2.3 | 97114343 | 69265736 | tier1 | Out-of-frame | 2446 | validated | 0 |
| SARC | TCGA-FX-A2QS-01A | TCGA-FX-A2QS | C12orf66|CPM | C12orf66 | CPM | 12 | 12 | -1 | -1 | 11 | 9 | 9 | 0.64 | 64609458 | 69326620 | tier1 | CDS-5UTR | 2451 | validated | 0 |
| SARC | TCGA-DX-A23T-01A | TCGA-DX-A23T | CPSF6|CPM | CPSF6 | CPM | 12 | 12 | 1 | -1 | 160 | 536 | 511 | 1.6 | 69633486 | 69252851 | tier1 | Out-of-frame | 4154 | NA | 0.36424 |
| SARC | TCGA-HB-A3YV-01A | TCGA-HB-A3YV | EVC2|CPM | EVC2 | CPM | 4 | 12 | -1 | -1 | 3 | 2 | 2 | 1.1 | 5710013 | 69236109 | tier1 | NA | 5882 | NA | 0.34697 |
| SARC | TCGA-DX-A2IZ-01A | TCGA-DX-A2IZ | FRS2|CPM | FRS2 | CPM | 12 | 12 | 1 | -1 | 194 | 52 | 37 | 0.13 | 69864310 | 69279669 | tier1 | 5UTR-CDS | 6748 | validated | 0.37742 |
| SARC | TCGA-DX-AB36-01A | TCGA-DX-AB36 | MVK|CPM | MVK | CPM | 12 | 12 | 1 | -1 | 133 | 90 | 79 | 0.28 | 110023930 | 69250459 | tier1 | Out-of-frame | 10862 | NA | 0.34928 |
| SARC | TCGA-3B-A9HS-01A | TCGA-3B-A9HS | RP11-362K2.2|CPM | RP11-362K2.2 | CPM | 12 | 12 | 1 | -1 | 6 | 19 | 19 | 0.34 | 58937962 | 69279669 | tier2 | 5UTR-CDS | 14927 | NA | 0 |
| SARC | TCGA-DX-A23V-01A | TCGA-DX-A23V | TCTN1|CPM | TCTN1 | CPM | 12 | 12 | 1 | -1 | 26 | 29 | 27 | 0.16 | 111078954 | 69236109 | tier2 | NA | 17615 | NA | 0 |
| SARC | TCGA-DX-AB37-01A | TCGA-DX-AB37 | ZBTB20|CPM | ZBTB20 | CPM | 3 | 12 | -1 | -1 | 3 | 2 | 2 | 0.89 | 114219199 | 69252851 | tier1 | 5UTR-CDS | 20082 | NA | 0 |
| TGCT | TCGA-2G-AAGT-01A | TCGA-2G-AAGT | KIF21A|CPM | KIF21A | CPM | 12 | 12 | -1 | -1 | 8 | 5 | 5 | 0.13 | 39836729 | 69279669 | tier2 | Out-of-frame | 8972 | NA | 0.35136 |
| BRCA | TCGA-A8-A06U-01A | TCGA-A8-A06U | SBF2|MDM2 | SBF2 | MDM2 | 11 | 12 | -1 | 1 | 4 | 2 | 2 | 0.046 | 9983504 | 69210592 | tier1 | In-frame | 15333 | NA | 0 |
| GBM | TCGA-06-5856-01A | TCGA-06-5856 | C12orf49|MDM2 | C12orf49 | MDM2 | 12 | 12 | -1 | 1 | 21 | 145 | 127 | 0.21 | 117175595 | 69229609 | tier1 | In-frame | 2422 | NA | 0 |
| GBM | TCGA-06-5856-01A | TCGA-06-5856 | CTDSP2|MDM2 | CTDSP2 | MDM2 | 12 | 12 | -1 | 1 | 9 | 39 | 37 | 1.3 | 58240155 | 69202988 | tier1 | Out-of-frame | 4329 | NA | 0.38027 |
| LUAD | TCGA-50-5049-01A | TCGA-50-5049 | C12orf28|MDM2 | C12orf28 | MDM2 | 12 | 12 | 1 | 1 | 2 | 1 | 1 | 0.067 | 70219343 | 69214105 | tier2 | 5UTR-CDS | 2413 | NA | 0 |
| LUAD | TCGA-49-4501-01A | TCGA-49-4501 | FRS2|MDM2 | FRS2 | MDM2 | 12 | 12 | 1 | 1 | 10 | 6 | 5 | 0.15 | 69925836 | 69202988 | tier1 | 5UTR-CDS | 6764 | NA | 0.38856 |
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