Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-CH-5737-01A | TCGA-CH-5737 | SMAP1|CGA | SMAP1 | CGA | 6 | 6 | 1 | -1 | 2 | 8 | 8 | 0.29 | 71483128 | 87797925 | tier2 | CDS-5UTR | 16359 | NA | 0 |
| PCPG | TCGA-QR-A70G-01B | TCGA-QR-A70G | BCAS3|PHF21A | BCAS3 | PHF21A | 17 | 11 | 1 | -1 | 2 | 1 | 1 | 0.94 | 58761397 | 46113774 | tier2 | CDS-5UTR | 1986 | NA | 0.36746 |
| SKCM | TCGA-FS-A4F4-06A | TCGA-FS-A4F4 | LDLRAD3|PHF21A | LDLRAD3 | PHF21A | 11 | 11 | 1 | -1 | 8 | 1 | 1 | 0.023 | 36057799 | 46113774 | tier3 | CDS-5UTR | 9279 | NA | 0.36857 |
| BLCA | TCGA-4Z-AA7S-01A | TCGA-4Z-AA7S | RAB3IP|CD63 | RAB3IP | CD63 | 12 | 12 | 1 | -1 | 1020 | 954 | 907 | 5.1 | 70132811 | 56120045 | tier1 | 5UTR-CDS | 14096 | NA | 0 |
| PRAD | TCGA-G9-7521-01A | TCGA-G9-7521 | TMSB10|CD63 | TMSB10 | CD63 | 2 | 12 | 1 | -1 | 2 | 8 | 1 | 100 | 85133795 | 56123444 | tier3 | NA | 18291 | NA | 0 |
| CESC | TCGA-C5-A1MQ-01A | TCGA-C5-A1MQ | PCBP2|AMHR2 | PCBP2 | AMHR2 | 12 | 12 | 1 | 1 | 228 | 178 | 151 | 0.058 | 53862616 | 53823930 | tier1 | Out-of-frame | 12365 | non-validated | 0.37683 |
| BLCA | TCGA-S5-A6DX-01A | TCGA-S5-A6DX | FRS2|LACRT | FRS2 | LACRT | 12 | 12 | 1 | -1 | 34 | 10 | 10 | 1.6 | 69864310 | 55027017 | tier1 | 5UTR-CDS | 6759 | NA | 0.37937 |
| SKCM | TCGA-GN-A26D-06A | TCGA-GN-A26D | RASSF3|ITGA7 | RASSF3 | ITGA7 | 12 | 12 | 1 | -1 | 1874 | 1526 | 1447 | 1.9 | 65004523 | 56079072 | tier1 | In-frame | 14380 | NA | 0 |
| UCEC | TCGA-FI-A3PV-01A | TCGA-FI-A3PV | MIB2|ACVR1B | MIB2 | ACVR1B | 1 | 12 | 1 | 1 | 7 | 6 | 6 | 0.54 | 1559325 | 52369049 | tier1 | CDS-5UTR | 10336 | NA | 0.38449 |
| OV | TCGA-24-1553-01A | TCGA-24-1553 | PAN2|MIP | PAN2 | MIP | 12 | 12 | -1 | -1 | 3 | 3 | 3 | 1.7 | 56726597 | 56847539 | tier1 | In-frame | 12228 | NA | 0.36525 |
| SKCM | TCGA-EE-A2MM-06A | TCGA-EE-A2MM | FGFR1OP2|TEC | FGFR1OP2 | TEC | 12 | 4 | 1 | -1 | 10 | 4 | 4 | 1.3 | 27091643 | 48158751 | tier1 | 5UTR-CDS | 6459 | NA | 0.33933 |
| SKCM | TCGA-FW-A3TV-06A | TCGA-FW-A3TV | GIT2|SMYD5 | GIT2 | SMYD5 | 12 | 2 | -1 | 1 | 41 | 22 | 19 | 1.8 | 110429432 | 73445989 | tier1 | In-frame | 7076 | NA | 0.37796 |
| BRCA | TCGA-AR-A0TX-01A | TCGA-AR-A0TX | PPM1H|USP15 | PPM1H | USP15 | 12 | 12 | -1 | 1 | 13 | 4 | 2 | 0.08 | 63328272 | 62687960 | tier1 | In-frame | 13327 | validated | 0.36247 |
| LUAD | TCGA-MP-A4TF-01A | TCGA-MP-A4TF | MON2|USP15 | MON2 | USP15 | 12 | 12 | 1 | 1 | 4 | 2 | 2 | 0.5 | 62861098 | 62783211 | tier1 | In-frame | 10573 | NA | 0.36248 |
| SARC | TCGA-HB-A3YV-01A | TCGA-HB-A3YV | C12orf66|USP15 | C12orf66 | USP15 | 12 | 12 | -1 | 1 | 2 | 2 | 1 | 0.13 | 64609458 | 62810878 | tier2 | NA | 2453 | NA | 0 |
| SKCM | TCGA-EB-A44Q-06A | TCGA-EB-A44Q | R3HDM2|USP15 | R3HDM2 | USP15 | 12 | 12 | -1 | 1 | 4 | 5 | 5 | 0.74 | 57789532 | 62749112 | tier1 | 5UTR-CDS | 14032 | NA | 0 |
| STAD | TCGA-KB-A93J-01A | TCGA-KB-A93J | UBE3B|GNS | UBE3B | GNS | 12 | 12 | 1 | -1 | 3 | 30 | 29 | 0.3 | 109919547 | 65122837 | tier1 | 5UTR-CDS | 19106 | NA | 0 |
| BLCA | TCGA-DK-AA6P-01A | TCGA-DK-AA6P | NUP107|CPM | NUP107 | CPM | 12 | 12 | 1 | -1 | 2 | 2 | 2 | 0.071 | 69115932 | 69279669 | tier3 | Out-of-frame | 11905 | NA | 0.35649 |
| BRCA | TCGA-AC-A7VB-01A | TCGA-AC-A7VB | RP11-150O12.1|CPM | RP11-150O12.1 | CPM | 8 | 12 | -1 | -1 | 13 | 5 | 5 | 0.004 | 37333360 | 69279669 | tier1 | 3UTR-CDS | 14917 | NA | 0 |
| GBM | TCGA-26-5132-01A | TCGA-26-5132 | PDZRN4|CPM | PDZRN4 | CPM | 12 | 12 | 1 | -1 | 4 | 8 | 8 | 2.8 | 41949562 | 69326620 | tier1 | CDS-5UTR | 12593 | validated | 0.35175 |
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