Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-A1-A0SN-01A | TCGA-A1-A0SN | ORMDL3|ANXA1 | ORMDL3 | ANXA1 | 17 | 9 | -1 | 1 | 2 | 5 | 2 | 0.61 | 38077294 | 75772570 | tier4 | 3UTR-5UTR | 12055 | NA | 0.37442 |
| BRCA | TCGA-C8-A12Z-01A | TCGA-C8-A12Z | PPP1R1B|ANXA1 | PPP1R1B | ANXA1 | 17 | 9 | 1 | 1 | 2 | 20 | 15 | 0.5 | 37792875 | 75772570 | tier3 | 3UTR-5UTR | 13379 | NA | 0.37417 |
| CESC | TCGA-IR-A3LL-01A | TCGA-IR-A3LL | OAS3|ANXA1 | OAS3 | ANXA1 | 12 | 9 | 1 | 1 | 2 | 89 | 7 | 0.15 | 113411054 | 75772570 | tier3 | 3UTR-5UTR | 11983 | NA | 0.37455 |
| CESC | TCGA-EK-A2RO-01A | TCGA-EK-A2RO | RAB7A|ANXA1 | RAB7A | ANXA1 | 3 | 9 | 1 | 1 | 2 | 75 | 40 | 0.18 | 128533639 | 75772570 | tier3 | 3UTR-5UTR | 14124 | NA | 0 |
| LGG | TCGA-FG-6688-01A | TCGA-FG-6688 | PHGDH|ANXA1 | PHGDH | ANXA1 | 1 | 9 | 1 | 1 | 2 | 20 | 18 | 0.002 | 120286836 | 75772570 | tier3 | 3UTR-5UTR | 12742 | NA | 0.37774 |
| PRAD | TCGA-EJ-5506-01A | TCGA-EJ-5506 | NFIX|ANXA1 | NFIX | ANXA1 | 19 | 9 | 1 | 1 | 2 | 3 | 3 | 0.45 | 13209610 | 75772570 | tier3 | 3UTR-5UTR | 11489 | NA | 0.38346 |
| PRAD | TCGA-EJ-7330-01A | TCGA-EJ-7330 | RHOB|ANXA1 | RHOB | ANXA1 | 2 | 9 | 1 | 1 | 2 | 7 | 3 | 0.19 | 20649200 | 75772570 | tier3 | 3UTR-5UTR | 14652 | NA | 0 |
| KIRP | TCGA-V9-A7HT-01A | TCGA-V9-A7HT | PPP2R4|AGTPBP1 | PPP2R4 | AGTPBP1 | 9 | 9 | 1 | -1 | 3 | 2 | 2 | 5.4 | 131873910 | 88257858 | tier1 | Out-of-frame | 13401 | NA | 0.36041 |
| SARC | TCGA-K1-A6RU-01A | TCGA-K1-A6RU | AKAP2|AGTPBP1 | AKAP2 | AGTPBP1 | 9 | 9 | 1 | -1 | 2 | 3 | 3 | 0.31 | 112811135 | 88327481 | tier2 | CDS-5UTR | 737 | NA | 0.35801 |
| BRCA | TCGA-E2-A15F-01A | TCGA-E2-A15F | CCDC14|ADAM19 | CCDC14 | ADAM19 | 3 | 5 | -1 | -1 | 3 | 1 | 1 | 0.15 | 123667538 | 156991451 | tier3 | In-frame | 3120 | NA | 0.36614 |
| BRCA | TCGA-C8-A12W-01A | TCGA-C8-A12W | TTC33|ADAM19 | TTC33 | ADAM19 | 5 | 5 | -1 | -1 | 5 | 1 | 1 | 0.049 | 40746900 | 156964999 | tier2 | In-frame | 18849 | NA | 0 |
| KIRC | TCGA-B8-A7U6-01A | TCGA-B8-A7U6 | PDZRN3|ADAM19 | PDZRN3 | ADAM19 | 3 | 5 | -1 | -1 | 2 | 3 | 3 | 0.98 | 73651505 | 156997988 | tier3 | Out-of-frame | 12587 | NA | 0.37684 |
| BLCA | TCGA-CF-A3MI-01A | TCGA-CF-A3MI | LIMA1|TAOK3 | LIMA1 | TAOK3 | 12 | 12 | -1 | -1 | 2 | 4 | 4 | 0.05 | 50642416 | 118682770 | tier2 | Out-of-frame | 9335 | NA | 0.37807 |
| BLCA | TCGA-4Z-AA82-01A | TCGA-4Z-AA82 | MED13L|TAOK3 | MED13L | TAOK3 | 12 | 12 | -1 | -1 | 30 | 34 | 30 | 0.035 | 116549233 | 118651915 | tier1 | Out-of-frame | 10187 | NA | 0.3808 |
| BRCA | TCGA-AR-A1AH-01A | TCGA-AR-A1AH | PCNXL2|TAOK3 | PCNXL2 | TAOK3 | 1 | 12 | -1 | -1 | 13 | 9 | 6 | 0.31 | 233270759 | 118639268 | tier1 | In-frame | 12435 | NA | 0.37769 |
| PRAD | TCGA-YJ-A8SW-01A | TCGA-YJ-A8SW | MED13L|TAOK3 | MED13L | TAOK3 | 12 | 12 | -1 | -1 | 108 | 108 | 101 | 0.035 | 116675273 | 118588963 | tier1 | Out-of-frame | 10188 | NA | 0.3808 |
| LUSC | TCGA-98-A53B-01A | TCGA-98-A53B | ATG5|EPHA7 | ATG5 | EPHA7 | 6 | 6 | -1 | -1 | 70 | 38 | 7 | 0.75 | 106756239 | 93982140 | tier1 | Out-of-frame | 1631 | NA | 0.37232 |
| LGG | TCGA-DU-6403-01A | TCGA-DU-6403 | BACH2|MAP3K7 | BACH2 | MAP3K7 | 6 | 6 | -1 | -1 | 8 | 7 | 7 | 0.46 | 90916288 | 91281526 | tier1 | 5UTR-CDS | 1898 | NA | 0.38702 |
| BRCA | TCGA-D8-A1JK-01A | TCGA-D8-A1JK | ZNF292|CGA | ZNF292 | CGA | 6 | 6 | 1 | -1 | 93 | 81 | 73 | 0.92 | 87865477 | 87797925 | tier1 | CDS-5UTR | 20440 | NA | 0 |
| LUAD | TCGA-95-7039-01A | TCGA-95-7039 | ATXN1|CGA | ATXN1 | CGA | 6 | 6 | -1 | -1 | 3 | 3 | 3 | 0.92 | 16658007 | 87797925 | tier1 | 5UTR-5UTR | 1801 | NA | 0.36832 |
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