Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-A2-A1FV-01A | TCGA-A2-A1FV | AL139022.1|PEBP4 | AL139022.1 | PEBP4 | 14 | 8 | 1 | -1 | 8 | 16 | 1 | 1.1 | 65453815 | 22584733 | tier2 | In-frame | 774 | NA | 0.35731 |
| BRCA | TCGA-E9-A22E-01A | TCGA-E9-A22E | BIN3|PEBP4 | BIN3 | PEBP4 | 8 | 8 | -1 | -1 | 21 | 69 | 65 | 100 | 22526557 | 22584733 | tier2 | Out-of-frame | 2101 | NA | 0.36408 |
| CESC | TCGA-VS-A8QC-01A | TCGA-VS-A8QC | PCM1|PEBP4 | PCM1 | PEBP4 | 8 | 8 | 1 | -1 | 3 | 1 | 1 | 3.4 | 17780697 | 22785233 | tier4 | 5UTR-5UTR | 12407 | NA | 0.36365 |
| COAD | TCGA-CM-5868-01A | TCGA-CM-5868 | ANO6|PEBP4 | ANO6 | PEBP4 | 12 | 8 | 1 | -1 | 6 | 4 | 4 | 0.65 | 45610174 | 22675248 | tier1 | Out-of-frame | 1036 | NA | 0.35846 |
| LUAD | TCGA-MN-A4N1-01A | TCGA-MN-A4N1 | BIN3|PEBP4 | BIN3 | PEBP4 | 8 | 8 | -1 | -1 | 183 | 102 | 99 | 100 | 22502268 | 22571049 | tier1 | Out-of-frame | 2102 | NA | 0.36408 |
| STAD | TCGA-VQ-A91N-01A | TCGA-VQ-A91N | TRIM35|PEBP4 | TRIM35 | PEBP4 | 8 | 8 | -1 | -1 | 3 | 18 | 16 | 1.6 | 27168318 | 22785233 | tier1 | CDS-5UTR | 18639 | NA | 0 |
| LUSC | TCGA-63-A5ML-01A | TCGA-63-A5ML | EML1|ADAMDEC1 | EML1 | ADAMDEC1 | 14 | 8 | 1 | 1 | 5 | 3 | 3 | 0.11 | 100259880 | 24249775 | tier1 | In-frame | 5547 | NA | 0.35714 |
| SKCM | TCGA-EE-A2GR-06A | TCGA-EE-A2GR | TATDN2|IRAK2 | TATDN2 | IRAK2 | 3 | 3 | 1 | 1 | 19 | 13 | 11 | 0.19 | 10312699 | 10280432 | tier1 | In-frame | 17430 | NA | 0 |
| HNSC | TCGA-D6-6826-01A | TCGA-D6-6826 | VGLL4|CHL1 | VGLL4 | CHL1 | 3 | 3 | -1 | 1 | 57 | 33 | 30 | 3.7 | 11643307 | 419501 | tier1 | In-frame | 19555 | NA | 0 |
| SKCM | TCGA-D9-A1JX-06A | TCGA-D9-A1JX | AC090098.1|TRPM1 | AC090098.1 | TRPM1 | 15 | 15 | -1 | -1 | 17 | 2 | 2 | 0.8 | 33445249 | 31353717 | tier1 | Out-of-frame | 202 | NA | 0.34662 |
| LUAD | TCGA-78-7161-01A | TCGA-78-7161 | IQSEC1|GSTM3 | IQSEC1 | GSTM3 | 3 | 1 | -1 | -1 | 2 | 1 | 1 | 0.3 | 13008887 | 110282115 | tier2 | Out-of-frame | 8332 | NA | 0.3461 |
| BLCA | TCGA-UY-A78N-01A | TCGA-UY-A78N | FAF1|CHIA | FAF1 | CHIA | 1 | 1 | -1 | 1 | 10 | 6 | 6 | 0.88 | 51121114 | 111857162 | tier1 | Out-of-frame | 5973 | NA | 0.36778 |
| CESC | TCGA-C5-A3HD-01B | TCGA-C5-A3HD | PHTF1|PTPN22 | PHTF1 | PTPN22 | 1 | 1 | -1 | -1 | 2066 | 3112 | 2944 | 0.43 | 114300321 | 114362276 | tier1 | Out-of-frame | 12766 | NA | 0.36961 |
| CESC | TCGA-C5-A3HD-01B | TCGA-C5-A3HD | RSBN1|PTPN22 | RSBN1 | PTPN22 | 1 | 1 | -1 | -1 | 1766 | 1323 | 1227 | 0.071 | 114354332 | 114362276 | tier1 | In-frame | 15140 | NA | 0 |
| OV | TCGA-29-1785-01A | TCGA-29-1785 | VTCN1|PTGFRN | VTCN1 | PTGFRN | 1 | 1 | -1 | 1 | 7 | 27 | 25 | 2 | 117753446 | 117484337 | tier1 | Out-of-frame | 19691 | NA | 0 |
| UCEC | TCGA-FI-A3PV-01A | TCGA-FI-A3PV | MAN1A2|PTGFRN | MAN1A2 | PTGFRN | 1 | 1 | 1 | 1 | 9 | 5 | 5 | 0.013 | 117984947 | 117529423 | tier1 | Out-of-frame | 9806 | NA | 0.3569 |
| BRCA | TCGA-AR-A254-01A | TCGA-AR-A254 | FBXL20|NOTCH2 | FBXL20 | NOTCH2 | 17 | 1 | -1 | -1 | 6 | 9 | 8 | 0.35 | 37557614 | 120465401 | tier1 | Out-of-frame | 6316 | NA | 0.38459 |
| BRCA | TCGA-BH-A0W3-01A | TCGA-BH-A0W3 | MAGI3|NOTCH2 | MAGI3 | NOTCH2 | 1 | 1 | 1 | -1 | 3 | 7 | 6 | 0.76 | 113933971 | 120529705 | tier1 | In-frame | 9774 | NA | 0.38557 |
| KIRP | TCGA-MH-A855-01A | TCGA-MH-A855 | EIF5|NOTCH2 | EIF5 | NOTCH2 | 14 | 1 | 1 | -1 | 7 | 11 | 10 | 0.055 | 103800934 | 120465069 | tier1 | 5UTR-CDS | 5484 | NA | 0.38648 |
| BRCA | TCGA-OL-A5D7-01A | TCGA-OL-A5D7 | MAN1A2|CD101 | MAN1A2 | CD101 | 1 | 1 | 1 | 1 | 96 | 61 | 56 | 1.1 | 118009049 | 117576482 | tier1 | In-frame | 9804 | NA | 0.33581 |
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