Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| HNSC | TCGA-CR-7388-01A | TCGA-CR-7388 | CBFB|ATP13A3 | CBFB | ATP13A3 | 16 | 3 | 1 | -1 | 9 | 2 | 2 | 0.86 | 67070658 | 194182965 | tier1 | CDS-5UTR | 3054 | NA | 0.36008 |
| BRCA | TCGA-D8-A1XK-01A | TCGA-D8-A1XK | TSPAN14|SFTPD | TSPAN14 | SFTPD | 10 | 10 | 1 | -1 | 38 | 23 | 22 | 0.021 | 82228443 | 81702635 | tier1 | 5UTR-CDS | 18790 | NA | 0 |
| STAD | TCGA-VQ-A91N-01A | TCGA-VQ-A91N | GATA4|SFTPD | GATA4 | SFTPD | 8 | 10 | 1 | -1 | 2 | 3 | 2 | 0.54 | 11561813 | 81706418 | tier2 | 5UTR-5UTR | 6970 | NA | 0.37954 |
| UCEC | TCGA-5B-A90C-01A | TCGA-5B-A90C | GBF1|SFTPD | GBF1 | SFTPD | 10 | 10 | 1 | -1 | 7 | 9 | 8 | 1 | 104005538 | 81697984 | tier1 | 5UTR-CDS | 7004 | NA | 0.35837 |
| DLBC | TCGA-FA-A7DS-01A | TCGA-FA-A7DS | RBM27|LARS | RBM27 | LARS | 5 | 5 | 1 | -1 | 14 | 22 | 22 | 0.31 | 145583387 | 145557228 | tier1 | Out-of-frame | 14455 | NA | 0 |
| ESCA | TCGA-VR-A8Q7-01A | TCGA-VR-A8Q7 | KIAA1432|LARS | KIAA1432 | LARS | 9 | 5 | 1 | -1 | 7 | 65 | 54 | 0.33 | 5757451 | 145515227 | tier1 | In-frame | 8878 | NA | 0.35318 |
| SKCM | TCGA-ER-A19T-01A | TCGA-ER-A19T | ZNF704|IMPA1 | ZNF704 | IMPA1 | 8 | 8 | -1 | -1 | 20 | 8 | 5 | 0.4 | 81599461 | 82583282 | tier1 | Out-of-frame | 20634 | validated | 0 |
| BRCA | TCGA-A7-A2KD-01A | TCGA-A7-A2KD | STX8|HSD17B4 | STX8 | HSD17B4 | 17 | 5 | -1 | 1 | 19 | 15 | 15 | 1.1 | 9395146 | 118792010 | tier1 | In-frame | 17142 | NA | 0 |
| SKCM | TCGA-D3-A51N-06A | TCGA-D3-A51N | POLK|HSD17B4 | POLK | HSD17B4 | 5 | 5 | 1 | 1 | 55 | 109 | 86 | 0.17 | 74848416 | 118792010 | tier1 | Out-of-frame | 13158 | NA | 0.3535 |
| BRCA | TCGA-A7-A13E-01A | TCGA-A7-A13E | EXTL3|TMEM66 | EXTL3 | TMEM66 | 8 | 8 | 1 | -1 | 7 | 3 | 3 | 0.5 | 28480327 | 29924434 | tier1 | 5UTR-CDS | 5941 | NA | 0.35155 |
| BRCA | TCGA-AO-A0J5-01A | TCGA-AO-A0J5 | KIF13B|TMEM66 | KIF13B | TMEM66 | 8 | 8 | -1 | -1 | 29 | 11 | 10 | 0.67 | 29003895 | 29927575 | tier1 | In-frame | 8947 | NA | 0.3701 |
| PRAD | TCGA-EJ-A65M-01A | TCGA-EJ-A65M | PPAPDC1B|TMEM66 | PPAPDC1B | TMEM66 | 8 | 8 | -1 | -1 | 3 | 9 | 8 | 0.58 | 38124785 | 29927575 | tier4 | Out-of-frame | 13218 | NA | 0.35053 |
| GBM | TCGA-06-5415-01A | TCGA-06-5415 | METTL12|DPF2 | METTL12 | DPF2 | 11 | 11 | 1 | 1 | 5 | 5 | 4 | 0.71 | 62433418 | 65119154 | tier1 | In-frame | 10266 | non-validated | 0.36428 |
| LIHC | TCGA-DD-A11C-01A | TCGA-DD-A11C | FRMD8|DPF2 | FRMD8 | DPF2 | 11 | 11 | 1 | 1 | 2 | 3 | 3 | 0.03 | 65172539 | 65119154 | tier3 | In-frame | 6734 | NA | 0.36659 |
| LUAD | TCGA-93-A4JO-01A | TCGA-93-A4JO | FRMD8|DPF2 | FRMD8 | DPF2 | 11 | 11 | 1 | 1 | 35 | 19 | 18 | 0.03 | 65154592 | 65119154 | tier1 | In-frame | 6733 | NA | 0.36659 |
| LUSC | TCGA-85-8276-01A | TCGA-85-8276 | AHNAK|DPF2 | AHNAK | DPF2 | 11 | 11 | -1 | 1 | 15 | 7 | 7 | 0.54 | 62259204 | 65116321 | tier1 | Out-of-frame | 690 | NA | 0.37586 |
| LUSC | TCGA-77-8153-01A | TCGA-77-8153 | AP000769.1|DPF2 | AP000769.1 | DPF2 | 11 | 11 | 1 | 1 | 5 | 3 | 3 | 0.24 | 65222802 | 65116321 | tier1 | NA | 1053 | NA | 0.36428 |
| PRAD | TCGA-YL-A9WY-01A | TCGA-YL-A9WY | ZMAT4|ELP3 | ZMAT4 | ELP3 | 8 | 8 | -1 | 1 | 2 | 2 | 2 | 1.1 | 40532223 | 28047166 | tier2 | In-frame | 20314 | NA | 0 |
| SKCM | TCGA-D3-A1Q1-06A | TCGA-D3-A1Q1 | RIMKLB|ELP3 | RIMKLB | ELP3 | 12 | 8 | 1 | 1 | 6 | 16 | 14 | 0.21 | 8866637 | 27954736 | tier1 | In-frame | 14689 | non-validated | 0 |
| STAD | TCGA-BR-4357-01A | TCGA-BR-4357 | HMBOX1|ELP3 | HMBOX1 | ELP3 | 8 | 8 | 1 | 1 | 5 | 10 | 10 | 0.13 | 28748195 | 27995215 | tier1 | 5UTR-CDS | 7845 | NA | 0.35655 |
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