Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-J4-AATZ-01A | TCGA-J4-AATZ | SMAD9|CCNA1 | SMAD9 | CCNA1 | 13 | 13 | -1 | 1 | 14 | 13 | 12 | 0.39 | 37427556 | 37007170 | tier1 | In-frame | 16355 | NA | 0 |
| PRAD | TCGA-J9-A52D-01A | TCGA-J9-A52D | UGGT2|TRPC4 | UGGT2 | TRPC4 | 13 | 13 | -1 | -1 | 22 | 19 | 5 | 0.7 | 96675294 | 38357497 | tier1 | CDS-5UTR | 19197 | NA | 0 |
| PRAD | TCGA-CH-5753-01A | TCGA-CH-5753 | NBEA|POSTN | NBEA | POSTN | 13 | 13 | 1 | -1 | 2 | 1 | 1 | 0.031 | 35883729 | 38171419 | tier3 | In-frame | 11123 | NA | 0.3707 |
| SKCM | TCGA-EE-A29C-06A | TCGA-EE-A29C | NUPL1|KL | NUPL1 | KL | 13 | 13 | 1 | 1 | 10 | 3 | 3 | 1.1 | 25876018 | 33627904 | tier1 | Out-of-frame | 11958 | NA | 0.35223 |
| BRCA | TCGA-AN-A0FW-01A | TCGA-AN-A0FW | MSI2|SLC39A11 | MSI2 | SLC39A11 | 17 | 17 | 1 | -1 | 94 | 85 | 81 | 0.017 | 55339553 | 71027853 | tier1 | In-frame | 10722 | NA | 0.34687 |
| BRCA | TCGA-BH-A0DD-01A | TCGA-BH-A0DD | PPFIA1|SLC39A11 | PPFIA1 | SLC39A11 | 11 | 17 | 1 | -1 | 53 | 41 | 40 | 6.3 | 70172924 | 71027853 | tier1 | In-frame | 13266 | NA | 0.36435 |
| BRCA | TCGA-D8-A27N-01A | TCGA-D8-A27N | USP22|SLC39A11 | USP22 | SLC39A11 | 17 | 17 | -1 | -1 | 18 | 60 | 53 | 0.52 | 20945978 | 70732858 | tier1 | Out-of-frame | 19336 | NA | 0 |
| LUSC | TCGA-58-8393-01A | TCGA-58-8393 | MED1|SLC39A11 | MED1 | SLC39A11 | 17 | 17 | -1 | -1 | 2 | 1 | 1 | 0.047 | 37566834 | 71084914 | tier2 | CDS-5UTR | 10161 | NA | 0.35594 |
| READ | TCGA-EF-5831-01A | TCGA-EF-5831 | GNA13|SLC39A11 | GNA13 | SLC39A11 | 17 | 17 | -1 | -1 | 13 | 4 | 4 | 2.2 | 63049620 | 71027853 | tier1 | In-frame | 7168 | NA | 0.37803 |
| SKCM | TCGA-EB-A4XL-01A | TCGA-EB-A4XL | NFE2L1|SLC39A11 | NFE2L1 | SLC39A11 | 17 | 17 | 1 | -1 | 10 | 8 | 6 | 0.14 | 46134864 | 70944014 | tier1 | In-frame | 11454 | NA | 0.36697 |
| BRCA | TCGA-A7-A26J-01A | TCGA-A7-A26J | THRAP3|EPHB2 | THRAP3 | EPHB2 | 1 | 1 | 1 | 1 | 25 | 24 | 23 | 2.6 | 36725085 | 23107914 | tier1 | 5UTR-CDS | 17786 | non-validated | 0 |
| GBM | TCGA-28-2513-01A | TCGA-28-2513 | NBPF3|EPHB2 | NBPF3 | EPHB2 | 1 | 1 | 1 | 1 | 5 | 14 | 12 | 0.21 | 21771712 | 23189530 | tier1 | 5UTR-CDS | 11133 | NA | 0.38357 |
| STAD | TCGA-BR-7716-01A | TCGA-BR-7716 | TOMM20|EPHB2 | TOMM20 | EPHB2 | 1 | 1 | -1 | 1 | 3 | 138 | 125 | 0.046 | 235291910 | 23208852 | tier1 | In-frame | 18434 | NA | 0 |
| CESC | TCGA-DS-A1OC-01A | TCGA-DS-A1OC | PCGF3|PDE6B | PCGF3 | PDE6B | 4 | 4 | 1 | 1 | 10 | 5 | 5 | 0.016 | 699759 | 647641 | tier1 | 5UTR-CDS | 12399 | NA | 0.35122 |
| UCEC | TCGA-D1-A3JP-01A | TCGA-D1-A3JP | ABLIM1|PDE6B | ABLIM1 | PDE6B | 10 | 4 | -1 | 1 | 22 | 7 | 6 | 0.26 | 116286419 | 628466 | tier1 | 5UTR-CDS | 117 | NA | 0.36962 |
| GBM | TCGA-12-1597-01B | TCGA-12-1597 | NFASC|RTN3 | NFASC | RTN3 | 1 | 11 | 1 | 1 | 29 | 69 | 54 | 0.54 | 204951148 | 63525628 | tier1 | Out-of-frame | 11432 | NA | 0.37333 |
| LIHC | TCGA-BC-A8YO-01A | TCGA-BC-A8YO | ATL3|RTN3 | ATL3 | RTN3 | 11 | 11 | -1 | 1 | 11 | 8 | 7 | 0.03 | 63426233 | 63517463 | tier1 | Out-of-frame | 1650 | NA | 0.36315 |
| UCEC | TCGA-EY-A2ON-01A | TCGA-EY-A2ON | ARID3A|MORC2 | ARID3A | MORC2 | 19 | 22 | 1 | -1 | 223 | 182 | 146 | 0.01 | 929896 | 31328756 | tier1 | In-frame | 1371 | NA | 0.36703 |
| SARC | TCGA-DX-A1L4-01A | TCGA-DX-A1L4 | ANO4|NTS | ANO4 | NTS | 12 | 12 | 1 | 1 | 39 | 17 | 17 | 0.17 | 101381448 | 86272123 | tier2 | Out-of-frame | 1030 | NA | 0.35019 |
| SARC | TCGA-3B-A9HL-01A | TCGA-3B-A9HL | OSBPL8|NTS | OSBPL8 | NTS | 12 | 12 | -1 | 1 | 47 | 3 | 3 | 1.1 | 76844631 | 86270418 | tier1 | In-frame | 12088 | NA | 0.35815 |
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