Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| KIRC | TCGA-B0-4844-01A | TCGA-B0-4844 | DYM|SLC14A2 | DYM | SLC14A2 | 18 | 18 | -1 | 1 | 7 | 6 | 6 | 1.4 | 46904937 | 43246102 | tier1 | In-frame | 5199 | NA | 0.34167 |
| BRCA | TCGA-E9-A22D-01A | TCGA-E9-A22D | EFHA1|ATP8A2 | EFHA1 | ATP8A2 | 13 | 13 | -1 | 1 | 13 | 17 | 16 | 0.65 | 22178078 | 26402256 | tier1 | In-frame | 5340 | NA | 0.36047 |
| BRCA | TCGA-A7-A4SE-01A | TCGA-A7-A4SE | RNF13|ATP8A2 | RNF13 | ATP8A2 | 3 | 13 | 1 | 1 | 3 | 4 | 4 | 0.98 | 149570383 | 26273311 | tier1 | In-frame | 14756 | NA | 0 |
| LIHC | TCGA-DD-AA3A-01A | TCGA-DD-AA3A | WASF3|ATP8A2 | WASF3 | ATP8A2 | 13 | 13 | 1 | 1 | 3 | 6 | 6 | 0.13 | 27131956 | 26411301 | tier1 | 5UTR-CDS | 19737 | NA | 0 |
| SARC | TCGA-SI-A71O-06A | TCGA-SI-A71O | FAM48A|ATP8A2 | FAM48A | ATP8A2 | 13 | 13 | -1 | 1 | 43 | 17 | 16 | 0.28 | 37633696 | 26343184 | tier1 | 5UTR-CDS | 6176 | NA | 0.3509 |
| SKCM | TCGA-ER-A42L-06A | TCGA-ER-A42L | PDS5B|ATP8A2 | PDS5B | ATP8A2 | 13 | 13 | 1 | 1 | 4 | 6 | 3 | 0.06 | 33160730 | 26402256 | tier1 | 5UTR-CDS | 12566 | NA | 0.34583 |
| LUSC | TCGA-60-2720-01A | TCGA-60-2720 | DNMBP|TPTE2 | DNMBP | TPTE2 | 10 | 13 | -1 | -1 | 2 | 2 | 2 | 0.41 | 101769595 | 20012293 | tier2 | 5UTR-CDS | 5001 | NA | 0.36655 |
| BLCA | TCGA-DK-AA6P-01A | TCGA-DK-AA6P | UBL3|CDK8 | UBL3 | CDK8 | 13 | 13 | -1 | 1 | 2 | 4 | 4 | 0.48 | 30423649 | 26911704 | tier3 | Out-of-frame | 19120 | NA | 0 |
| PRAD | TCGA-ZG-A9KY-01A | TCGA-ZG-A9KY | WASF3|CDK8 | WASF3 | CDK8 | 13 | 13 | 1 | 1 | 3 | 2 | 2 | 0.52 | 27257111 | 26911704 | tier2 | Out-of-frame | 19738 | NA | 0 |
| BLCA | TCGA-DK-AA6P-01A | TCGA-DK-AA6P | B3GALTL|ALOX5AP | B3GALTL | ALOX5AP | 13 | 13 | 1 | 1 | 27 | 17 | 16 | 0.47 | 31898032 | 31330081 | tier1 | Out-of-frame | 1851 | NA | 0.34168 |
| SKCM | TCGA-FS-A1Z4-06A | TCGA-FS-A1Z4 | PDDC1|ALOX5AP | PDDC1 | ALOX5AP | 11 | 13 | -1 | 1 | 65 | 19 | 16 | 1.7 | 770993 | 31326189 | tier1 | In-frame | 12458 | NA | 0.34925 |
| LGG | TCGA-S9-A89Z-01A | TCGA-S9-A89Z | LONP2|CHRM3 | LONP2 | CHRM3 | 16 | 1 | 1 | 1 | 2 | 4 | 4 | 0.047 | 48368269 | 240070733 | tier2 | CDS-5UTR | 9430 | NA | 0.37676 |
| PRAD | TCGA-EJ-5519-01A | TCGA-EJ-5519 | C1orf132|CHRM3 | C1orf132 | CHRM3 | 1 | 1 | -1 | 1 | 27 | 12 | 12 | 0.62 | 208041271 | 239990552 | tier1 | NA | 2586 | NA | 0 |
| SKCM | TCGA-FS-A1ZU-06A | TCGA-FS-A1ZU | CALD1|SLC41A1 | CALD1 | SLC41A1 | 7 | 1 | 1 | -1 | 56 | 56 | 55 | 0.23 | 134576424 | 205780215 | tier1 | CDS-5UTR | 2905 | non-validated | 0.36466 |
| BRCA | TCGA-A8-A08J-01A | TCGA-A8-A08J | RABGAP1L|LGR6 | RABGAP1L | LGR6 | 1 | 1 | 1 | 1 | 3 | 1 | 1 | 3 | 174606626 | 202266636 | tier2 | Out-of-frame | 14150 | NA | 0 |
| LUSC | TCGA-37-4130-01A | TCGA-37-4130 | PPP1R12B|LGR6 | PPP1R12B | LGR6 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 0.12 | 202386045 | 202245434 | tier3 | In-frame | 13355 | NA | 0.36465 |
| BRCA | TCGA-GM-A2DH-01A | TCGA-GM-A2DH | NFIA|DCLK1 | NFIA | DCLK1 | 1 | 13 | 1 | -1 | 6 | 4 | 3 | 0.016 | 61798258 | 36413313 | tier1 | Out-of-frame | 11466 | NA | 0.36584 |
| LIHC | TCGA-DD-A4NE-01A | TCGA-DD-A4NE | ASPH|DCLK1 | ASPH | DCLK1 | 8 | 13 | -1 | -1 | 5 | 4 | 2 | 0.009 | 62438536 | 36397012 | tier1 | Out-of-frame | 1539 | non-validated | 0.36203 |
| PRAD | TCGA-G9-6348-01A | TCGA-G9-6348 | A2LD1|DCLK1 | A2LD1 | DCLK1 | 13 | 13 | -1 | -1 | 2 | 1 | 1 | 0.008 | 101236079 | 36348836 | tier2 | 5UTR-CDS | 1 | NA | 0.35917 |
| STAD | TCGA-D7-8576-01A | TCGA-D7-8576 | ELF1|DCLK1 | ELF1 | DCLK1 | 13 | 13 | -1 | -1 | 6 | 18 | 17 | 0.88 | 41593364 | 36700293 | tier4 | 5UTR-5UTR | 5491 | NA | 0.37151 |
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