Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| UCEC | TCGA-EO-A3KW-01A | TCGA-EO-A3KW | BIRC6|MATN3 | BIRC6 | MATN3 | 2 | 2 | 1 | -1 | 31 | 16 | 9 | 1.4 | 32641231 | 20206071 | tier1 | In-frame | 2110 | NA | 0.371 |
| BLCA | TCGA-FD-A43N-01A | TCGA-FD-A43N | PLEKHA7|TRIM21 | PLEKHA7 | TRIM21 | 11 | 11 | -1 | -1 | 10 | 7 | 7 | 1.1 | 17035536 | 4411688 | tier1 | CDS-5UTR | 13013 | NA | 0.36086 |
| BRCA | TCGA-E2-A155-01A | TCGA-E2-A155 | CMTM8|RAF1 | CMTM8 | RAF1 | 3 | 3 | 1 | -1 | 6 | 13 | 11 | 0.14 | 32280611 | 12660246 | tier1 | CDS-5UTR | 3899 | NA | 0.38735 |
| PRAD | TCGA-HC-8256-01A | TCGA-HC-8256 | PAPD7|RAF1 | PAPD7 | RAF1 | 5 | 3 | 1 | -1 | 23 | 18 | 18 | 0.13 | 6751310 | 12641307 | tier1 | In-frame | 12250 | NA | 0.38624 |
| SKCM | TCGA-EE-A2MI-06A | TCGA-EE-A2MI | TRAK1|RAF1 | TRAK1 | RAF1 | 3 | 3 | 1 | -1 | 68 | 51 | 46 | 2.2 | 42235390 | 12641914 | tier1 | In-frame | 18560 | non-validated | 0 |
| TGCT | TCGA-2G-AAGA-01A | TCGA-2G-AAGA | EDC3|SLC6A11 | EDC3 | SLC6A11 | 15 | 3 | -1 | 1 | 17 | 20 | 18 | 0.18 | 74948074 | 10967690 | tier1 | In-frame | 5268 | NA | 0.35347 |
| BLCA | TCGA-UY-A78K-01A | TCGA-UY-A78K | MKRN2|PPARG | MKRN2 | PPARG | 3 | 3 | 1 | 1 | 17 | 14 | 12 | 0.2 | 12598675 | 12353879 | tier1 | CDS-5UTR | 10437 | NA | 0.38552 |
| BLCA | TCGA-XF-AAML-01A | TCGA-XF-AAML | MKRN2|PPARG | MKRN2 | PPARG | 3 | 3 | 1 | 1 | 19 | 8 | 8 | 0.2 | 12598675 | 12353879 | tier1 | CDS-5UTR | 10438 | NA | 0.38552 |
| BLCA | TCGA-DK-A2I1-01A | TCGA-DK-A2I1 | TSEN2|PPARG | TSEN2 | PPARG | 3 | 3 | 1 | 1 | 11 | 26 | 26 | 2.4 | 12546730 | 12458203 | tier1 | In-frame | 18762 | NA | 0 |
| BLCA | TCGA-E7-A4IJ-01A | TCGA-E7-A4IJ | TSEN2|PPARG | TSEN2 | PPARG | 3 | 3 | 1 | 1 | 5 | 5 | 5 | 2.4 | 12560696 | 12421203 | tier1 | CDS-5UTR | 18763 | NA | 0 |
| BLCA | TCGA-GC-A3RD-01A | TCGA-GC-A3RD | TSEN2|PPARG | TSEN2 | PPARG | 3 | 3 | 1 | 1 | 39 | 34 | 26 | 2.4 | 12538053 | 12475397 | tier1 | Out-of-frame | 18764 | NA | 0 |
| LGG | TCGA-DU-5871-01A | TCGA-DU-5871 | ATG7|PPARG | ATG7 | PPARG | 3 | 3 | 1 | 1 | 4 | 1 | 1 | 1.2 | 11468400 | 12475397 | tier3 | Out-of-frame | 1642 | NA | 0.38442 |
| THCA | TCGA-BJ-A0YZ-01A | TCGA-BJ-A0YZ | PAX8|PPARG | PAX8 | PPARG | 2 | 3 | -1 | 1 | 325 | 262 | 237 | 1 | 113994178 | 12421203 | tier1 | CDS-5UTR | 12325 | NA | 0.38309 |
| THCA | TCGA-BJ-A0ZF-01A | TCGA-BJ-A0ZF | PAX8|PPARG | PAX8 | PPARG | 2 | 3 | -1 | 1 | 793 | 451 | 401 | 1 | 113992971 | 12421203 | tier1 | CDS-5UTR | 12326 | NA | 0.38309 |
| THCA | TCGA-DE-A4M9-01A | TCGA-DE-A4M9 | PAX8|PPARG | PAX8 | PPARG | 2 | 3 | -1 | 1 | 714 | 526 | 475 | 1 | 113992971 | 12421203 | tier1 | CDS-5UTR | 12327 | NA | 0.38309 |
| THCA | TCGA-EM-A3AJ-01A | TCGA-EM-A3AJ | PAX8|PPARG | PAX8 | PPARG | 2 | 3 | -1 | 1 | 575 | 425 | 386 | 1 | 113992971 | 12421203 | tier1 | CDS-5UTR | 12328 | NA | 0.38309 |
| THCA | TCGA-ET-A39N-01A | TCGA-ET-A39N | PAX8|PPARG | PAX8 | PPARG | 2 | 3 | -1 | 1 | 539 | 253 | 226 | 1 | 113992971 | 12421203 | tier1 | CDS-5UTR | 12329 | NA | 0.38309 |
| BLCA | TCGA-ZF-AA5P-01A | TCGA-ZF-AA5P | DCAF8|FCRLA | DCAF8 | FCRLA | 1 | 1 | -1 | 1 | 20 | 14 | 12 | 0.34 | 160231075 | 161682875 | tier1 | 5UTR-CDS | 4586 | NA | 0.33132 |
| BRCA | TCGA-LL-A9Q3-01A | TCGA-LL-A9Q3 | UBE2F|RAMP1 | UBE2F | RAMP1 | 2 | 2 | 1 | 1 | 51 | 55 | 51 | 0.22 | 238925275 | 238820170 | tier1 | Out-of-frame | 19068 | NA | 0 |
| STAD | TCGA-BR-4357-01A | TCGA-BR-4357 | SCLY|RAMP1 | SCLY | RAMP1 | 2 | 2 | 1 | 1 | 6 | 5 | 5 | 0.29 | 238978118 | 238820170 | tier1 | Out-of-frame | 15410 | NA | 0 |
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