TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
COAD	TCGA-CM-6167-01A	TCGA-CM-6167	RNF43\|RARA	RNF43	RARA	17	17	-1	1	4	2	2	0.052	56492687	38487109	tier1	CDS-5UTR	14849	NA	0
LAML	TCGA-AB-2803-03A	TCGA-AB-2803	PML\|RARA	PML	RARA	15	17	1	1	18	7	4	0.15	74325755	38504568	tier1	In-frame	13094	NA	0.3906
LAML	TCGA-AB-2823-03A	TCGA-AB-2823	PML\|RARA	PML	RARA	15	17	1	1	26	35	31	0.15	74315749	38504568	tier1	In-frame	13095	NA	0.3906
LAML	TCGA-AB-2840-03A	TCGA-AB-2840	PML\|RARA	PML	RARA	15	17	1	1	15	22	20	0.15	74315749	38504568	tier1	In-frame	13096	NA	0.3906
LAML	TCGA-AB-2841-03B	TCGA-AB-2841	PML\|RARA	PML	RARA	15	17	1	1	18	7	7	0.15	74325755	38504568	tier1	In-frame	13097	NA	0.3906
LAML	TCGA-AB-2862-03A	TCGA-AB-2862	PML\|RARA	PML	RARA	15	17	1	1	61	19	14	0.15	74325755	38504568	tier1	In-frame	13098	NA	0.3906
LAML	TCGA-AB-2872-03A	TCGA-AB-2872	PML\|RARA	PML	RARA	15	17	1	1	18	12	9	0.15	74325755	38504568	tier1	In-frame	13099	NA	0.3906
LAML	TCGA-AB-2897-03A	TCGA-AB-2897	PML\|RARA	PML	RARA	15	17	1	1	29	8	7	0.15	74325755	38504568	tier1	In-frame	13100	NA	0.3906
LAML	TCGA-AB-2980-03A	TCGA-AB-2980	PML\|RARA	PML	RARA	15	17	1	1	14	8	8	0.15	74315749	38504568	tier1	In-frame	13101	validated	0.3906
LAML	TCGA-AB-2982-03B	TCGA-AB-2982	PML\|RARA	PML	RARA	15	17	1	1	19	8	7	0.15	74325755	38504568	tier1	In-frame	13102	non-validated	0.3906
LAML	TCGA-AB-2991-03A	TCGA-AB-2991	PML\|RARA	PML	RARA	15	17	1	1	48	23	18	0.15	74315749	38504568	tier1	In-frame	13103	validated	0.3906
LAML	TCGA-AB-2994-03A	TCGA-AB-2994	PML\|RARA	PML	RARA	15	17	1	1	29	9	8	0.15	74325755	38504568	tier1	In-frame	13104	non-validated	0.3906
LAML	TCGA-AB-2998-03A	TCGA-AB-2998	PML\|RARA	PML	RARA	15	17	1	1	39	20	18	0.15	74315749	38504568	tier1	In-frame	13105	validated	0.3906
LAML	TCGA-AB-2999-03B	TCGA-AB-2999	PML\|RARA	PML	RARA	15	17	1	1	7	6	6	0.15	74325755	38504568	tier1	In-frame	13106	validated	0.3906
LAML	TCGA-AB-3001-03A	TCGA-AB-3001	PML\|RARA	PML	RARA	15	17	1	1	43	3	3	0.15	74315749	38504568	tier1	In-frame	13107	NA	0.3906
LAML	TCGA-AB-3007-03A	TCGA-AB-3007	PML\|RARA	PML	RARA	15	17	1	1	50	22	20	0.15	74315749	38504568	tier1	In-frame	13108	validated	0.3906
READ	TCGA-AH-6643-01A	TCGA-AH-6643	SMARCE1\|RARA	SMARCE1	RARA	17	17	-1	1	330	85	65	2.4	38792183	38511515	tier2	In-frame	16395	NA	0
BLCA	TCGA-UY-A9PD-01A	TCGA-UY-A9PD	DHX8\|FMO5	DHX8	FMO5	17	1	1	-1	31	20	19	1.4	41561553	146661828	tier1	In-frame	4807	NA	0.34931
LUAD	TCGA-44-4112-01A	TCGA-44-4112	FBXO34\|LGALS3	FBXO34	LGALS3	14	14	1	1	49	46	42	0.49	55738255	55606993	tier1	5UTR-CDS	6350	non-validated	0.37149
OV	TCGA-59-2355-01A	TCGA-59-2355	FBXO34\|LGALS3	FBXO34	LGALS3	14	14	1	1	14	38	29	0.49	55738255	55604088	tier1	5UTR-5UTR	6351	NA	0.37149

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