TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
PRAD	TCGA-HC-8216-01A	TCGA-HC-8216	KIF18B\|TUBG1	KIF18B	TUBG1	17	17	-1	1	8	5	3	0.058	43024996	40764093	tier1	5UTR-CDS	8955	NA	0.36311
BLCA	TCGA-ZF-A9RD-01A	TCGA-ZF-A9RD	JUP\|ACLY	JUP	ACLY	17	17	-1	-1	25	20	18	6.6	39942840	40035177	tier1	5UTR-CDS	8506	NA	0.37499
SKCM	TCGA-YG-AA3P-06A	TCGA-YG-AA3P	FAM104A\|ACLY	FAM104A	ACLY	17	17	-1	-1	9	19	18	5.4	71223304	40058066	tier1	In-frame	5998	NA	0.37104
STAD	TCGA-BR-8077-01A	TCGA-BR-8077	TPX2\|ACLY	TPX2	ACLY	20	17	1	-1	3	89	83	1.9	30330450	40070153	tier1	5UTR-CDS	18515	NA	0
UCEC	TCGA-D1-A3JQ-01A	TCGA-D1-A3JQ	LEPREL4\|ACLY	LEPREL4	ACLY	17	17	-1	-1	4	2	2	0.43	39963048	40030218	tier1	In-frame	9300	NA	0.36432
PRAD	TCGA-2A-A8W3-01A	TCGA-2A-A8W3	WIPF2\|RAMP2	WIPF2	RAMP2	17	17	1	1	20	3	3	0.72	38375744	40913852	tier1	5UTR-CDS	19871	NA	0
BLCA	TCGA-XF-AAMQ-01A	TCGA-XF-AAMQ	SHANK2\|ANO1	SHANK2	ANO1	11	11	-1	1	4	10	10	1.5	70331419	70003053	tier1	Out-of-frame	15847	NA	0
BRCA	TCGA-A8-A07O-01A	TCGA-A8-A07O	CTTN\|ANO1	CTTN	ANO1	11	11	1	1	131	91	78	0.046	70256066	69933858	tier1	In-frame	4410	NA	0.38053
BRCA	TCGA-5T-A9QA-01A	TCGA-5T-A9QA	PRKRIR\|ANO1	PRKRIR	ANO1	11	11	-1	1	22	29	28	0.33	76091792	70016993	tier1	Out-of-frame	13574	NA	0.37046
BRCA	TCGA-A7-A26G-01A	TCGA-A7-A26G	RNF121\|ANO1	RNF121	ANO1	11	11	1	1	2	2	2	1.6	71671937	69933858	tier3	In-frame	14738	non-validated	0
CESC	TCGA-IR-A3LA-01A	TCGA-IR-A3LA	PPFIA1\|ANO1	PPFIA1	ANO1	11	11	1	1	776	729	671	0.9	70118542	69962564	tier1	In-frame	13243	NA	0.36547
ESCA	TCGA-VR-A8EU-01A	TCGA-VR-A8EU	OSBPL3\|ANO1	OSBPL3	ANO1	7	11	-1	1	50	248	224	0.33	25019505	69978025	tier1	5UTR-CDS	12078	NA	0.36777
HNSC	TCGA-CR-7399-01A	TCGA-CR-7399	DGCR2\|ANO1	DGCR2	ANO1	22	11	-1	1	79	52	40	0.24	19109641	69949172	tier1	Out-of-frame	4733	NA	0.34835
SKCM	TCGA-D3-A2J6-06A	TCGA-D3-A2J6	PPFIA1\|ANO1	PPFIA1	ANO1	11	11	1	1	195	104	98	0.9	70118542	69933858	tier1	In-frame	13242	NA	0.36547
STAD	TCGA-VQ-A91Y-01A	TCGA-VQ-A91Y	PPFIA1\|ANO1	PPFIA1	ANO1	11	11	1	1	3	28	24	0.9	70118542	70016993	tier1	Out-of-frame	13244	NA	0.36547
STAD	TCGA-VQ-AA6G-01A	TCGA-VQ-AA6G	PPFIA1\|ANO1	PPFIA1	ANO1	11	11	1	1	30	209	122	0.9	70118542	70007267	tier1	In-frame	13245	NA	0.36547
SKCM	TCGA-D9-A4Z2-01A	TCGA-D9-A4Z2	SKI\|CA6	SKI	CA6	1	1	1	1	3	2	2	0.021	2161174	9027718	tier1	Out-of-frame	15978	NA	0
BRCA	TCGA-A8-A09I-01A	TCGA-A8-A09I	C17orf75\|TOP2A	C17orf75	TOP2A	17	17	-1	-1	32	21	19	0.33	30662342	38569877	tier1	Out-of-frame	2529	validated	0
STAD	TCGA-BR-8483-01A	TCGA-BR-8483	PGAP3\|TOP2A	PGAP3	TOP2A	17	17	-1	-1	36	183	162	0.56	37844087	38556915	tier1	Out-of-frame	12658	NA	0.36853
BRCA	TCGA-LD-A9QF-01A	TCGA-LD-A9QF	SPOP\|RARA	SPOP	RARA	17	17	-1	1	6	8	8	0.009	47755295	38487109	tier1	5UTR-5UTR	16761	NA	0

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