Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-E2-A150-01A | TCGA-E2-A150 | CCDC129|DEFB118 | CCDC129 | DEFB118 | 7 | 20 | 1 | 1 | 3 | 2 | 2 | 0.65 | 31618048 | 29960660 | tier1 | Out-of-frame | 3115 | NA | 0.33867 |
| CESC | TCGA-VS-A9UP-01A | TCGA-VS-A9UP | TPX2|DEFB118 | TPX2 | DEFB118 | 20 | 20 | 1 | 1 | 3 | 2 | 2 | 1.8 | 30327424 | 29960660 | tier1 | 5UTR-CDS | 18518 | NA | 0 |
| HNSC | TCGA-CV-5443-01A | TCGA-CV-5443 | ITCH|DEFB118 | ITCH | DEFB118 | 20 | 20 | 1 | 1 | 172 | 97 | 80 | 3.2 | 33059320 | 29960660 | tier1 | Out-of-frame | 8355 | validated | 0.37292 |
| UCS | TCGA-N5-A4RD-01A | TCGA-N5-A4RD | TPX2|DEFB118 | TPX2 | DEFB118 | 20 | 20 | 1 | 1 | 96 | 38 | 29 | 1.8 | 30359485 | 29960660 | tier1 | Out-of-frame | 18517 | NA | 0 |
| ACC | TCGA-OR-A5LD-01A | TCGA-OR-A5LD | KIF18B|C1QL1 | KIF18B | C1QL1 | 17 | 17 | -1 | -1 | 2 | 1 | 1 | 0.54 | 43024996 | 43037735 | tier3 | 5UTR-CDS | 8954 | NA | 0.33806 |
| LUAD | TCGA-62-A46U-01A | TCGA-62-A46U | EFTUD2|C1QL1 | EFTUD2 | C1QL1 | 17 | 17 | -1 | -1 | 16 | 13 | 12 | 0.22 | 42945175 | 43037735 | tier1 | In-frame | 5365 | NA | 0.36004 |
| SARC | TCGA-MB-A8JL-01A | TCGA-MB-A8JL | KIAA1267|PYY | KIAA1267 | PYY | 17 | 17 | -1 | -1 | 7 | 8 | 8 | 0.68 | 44248221 | 42043900 | tier1 | CDS-5UTR | 8850 | NA | 0.36828 |
| STAD | TCGA-VQ-A925-01A | TCGA-VQ-A925 | NAGS|PYY | NAGS | PYY | 17 | 17 | 1 | -1 | 4 | 4 | 4 | 100 | 42082457 | 42043900 | tier1 | CDS-5UTR | 11078 | NA | 0.3548 |
| CESC | TCGA-VS-A8Q9-01A | TCGA-VS-A8Q9 | ZNF763|TEX101 | ZNF763 | TEX101 | 19 | 19 | 1 | 1 | 28 | 1 | 1 | 0.26 | 12036088 | 43920033 | tier2 | In-frame | 20654 | NA | 0 |
| PRAD | TCGA-XJ-A9DX-01A | TCGA-XJ-A9DX | FAM108B1|CCL25 | FAM108B1 | CCL25 | 9 | 19 | -1 | 1 | 32 | 7 | 6 | 1.1 | 74525550 | 8117884 | tier1 | 5UTR-5UTR | 6003 | NA | 0.3555 |
| SKCM | TCGA-EE-A2GJ-06A | TCGA-EE-A2GJ | LCP2|SLC34A1 | LCP2 | SLC34A1 | 5 | 5 | -1 | 1 | 34 | 39 | 33 | 0.43 | 169701305 | 176820695 | tier1 | In-frame | 9261 | NA | 0.37495 |
| LUAD | TCGA-55-8299-01A | TCGA-55-8299 | LMAN2|F12 | LMAN2 | F12 | 5 | 5 | -1 | -1 | 39 | 66 | 61 | 0.45 | 176761285 | 176831091 | tier1 | In-frame | 9377 | non-validated | 0.3664 |
| LAML | TCGA-AB-2811-03B | TCGA-AB-2811 | CTDP1|NFATC1 | CTDP1 | NFATC1 | 18 | 18 | 1 | 1 | 2 | 4 | 4 | 0.016 | 77478016 | 77227450 | tier4 | Out-of-frame | 4323 | NA | 0.37563 |
| SARC | TCGA-X6-A7WA-01A | TCGA-X6-A7WA | CTDP1|NFATC1 | CTDP1 | NFATC1 | 18 | 18 | 1 | 1 | 19 | 9 | 7 | 0.016 | 77475528 | 77287528 | tier1 | Out-of-frame | 4324 | NA | 0.37563 |
| SKCM | TCGA-ER-A19T-06A | TCGA-ER-A19T | KIAA1468|NFATC1 | KIAA1468 | NFATC1 | 18 | 18 | 1 | 1 | 6 | 5 | 5 | 0.023 | 59855264 | 77287528 | tier1 | Out-of-frame | 8884 | non-validated | 0.37366 |
| LUAD | TCGA-97-8179-01A | TCGA-97-8179 | EXOC1|IDO1 | EXOC1 | IDO1 | 4 | 8 | 1 | 1 | 5 | 5 | 4 | 0.076 | 56768704 | 39780071 | tier1 | Out-of-frame | 5893 | NA | 0.34002 |
| SARC | TCGA-X6-A8C3-01A | TCGA-X6-A8C3 | ENOSF1|PPT1 | ENOSF1 | PPT1 | 18 | 1 | -1 | -1 | 74 | 42 | 40 | 0.81 | 706470 | 40558179 | tier1 | In-frame | 5593 | NA | 0.34537 |
| BRCA | TCGA-AR-A255-01A | TCGA-AR-A255 | CHM|ABCB7 | CHM | ABCB7 | X | X | -1 | -1 | 6 | 2 | 2 | 0.13 | 85282495 | 74334666 | tier1 | Out-of-frame | 3690 | NA | 0.35737 |
| SARC | TCGA-HB-A3YV-01A | TCGA-HB-A3YV | ATRX|ABCB7 | ATRX | ABCB7 | X | X | -1 | -1 | 7 | 3 | 2 | 0.27 | 77041468 | 74334669 | tier1 | Out-of-frame | 1792 | NA | 0.37697 |
| SARC | TCGA-DX-A3LS-01A | TCGA-DX-A3LS | FGD5|SLC6A6 | FGD5 | SLC6A6 | 3 | 3 | 1 | 1 | 16 | 6 | 6 | 0.031 | 14863103 | 14526375 | tier1 | Out-of-frame | 6439 | validated | 0.35117 |
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