Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LIHC | TCGA-BC-A10T-01A | TCGA-BC-A10T | PC|ACTN4 | PC | ACTN4 | 11 | 19 | -1 | 1 | 114 | 61 | 57 | 0.21 | 66631245 | 39191240 | tier1 | In-frame | 12352 | NA | 0.37541 |
| OV | TCGA-23-1107-01A | TCGA-23-1107 | HNRNPL|ACTN4 | HNRNPL | ACTN4 | 19 | 19 | -1 | 1 | 2 | 12 | 10 | 0.37 | 39340340 | 39205109 | tier2 | In-frame | 7900 | NA | 0.37968 |
| PRAD | TCGA-KC-A7FA-01A | TCGA-KC-A7FA | TTC6|ACTN4 | TTC6 | ACTN4 | 14 | 19 | 1 | 1 | 2 | 2 | 2 | 1 | 38170731 | 39195574 | tier2 | Out-of-frame | 18860 | NA | 0 |
| BRCA | TCGA-B6-A0X7-01A | TCGA-B6-A0X7 | ALX4|STK33 | ALX4 | STK33 | 11 | 11 | -1 | -1 | 5 | 7 | 4 | 0.64 | 44289044 | 8414257 | tier1 | In-frame | 852 | NA | 0.36817 |
| BRCA | TCGA-AR-A24K-01A | TCGA-AR-A24K | B3GALTL|STK33 | B3GALTL | STK33 | 13 | 11 | 1 | -1 | 3 | 11 | 9 | 1.6 | 31789237 | 8496613 | tier1 | CDS-5UTR | 1855 | NA | 0.35139 |
| LGG | TCGA-WY-A859-01A | TCGA-WY-A859 | SMAD5|COL5A1 | SMAD5 | COL5A1 | 5 | 9 | 1 | 1 | 2 | 8 | 7 | 2.1 | 135468651 | 137591755 | tier2 | 5UTR-CDS | 16349 | NA | 0 |
| SARC | TCGA-DX-AB2H-01A | TCGA-DX-AB2H | RNH1|COL5A1 | RNH1 | COL5A1 | 11 | 9 | -1 | 1 | 2 | 1 | 1 | 0.26 | 494515 | 137533620 | tier3 | 3UTR-5UTR | 14857 | NA | 0 |
| STAD | TCGA-CG-4449-01A | TCGA-CG-4449 | ARHGEF10L|PAK4 | ARHGEF10L | PAK4 | 1 | 19 | 1 | 1 | 9 | 8 | 6 | 0.037 | 17991090 | 39660172 | tier1 | CDS-5UTR | 1287 | NA | 0.38003 |
| BLCA | TCGA-GV-A3QF-01A | TCGA-GV-A3QF | TAF4|LAMA5 | TAF4 | LAMA5 | 20 | 20 | -1 | -1 | 75 | 58 | 49 | 0.54 | 60639507 | 60885367 | tier1 | In-frame | 17339 | NA | 0 |
| BRCA | TCGA-A7-A13D-01A | TCGA-A7-A13D | TAF4|LAMA5 | TAF4 | LAMA5 | 20 | 20 | -1 | -1 | 2 | 1 | 1 | 0.54 | 60639507 | 60913206 | tier2 | In-frame | 17338 | non-validated | 0 |
| BRCA | TCGA-D8-A27F-01A | TCGA-D8-A27F | UBN1|LAMA5 | UBN1 | LAMA5 | 16 | 20 | 1 | -1 | 8 | 6 | 1 | 0.21 | 4911103 | 60937608 | tier3 | In-frame | 19128 | non-validated | 0 |
| SARC | TCGA-DX-A6YQ-01A | TCGA-DX-A6YQ | HEATR2|LAMA5 | HEATR2 | LAMA5 | 7 | 20 | 1 | -1 | 21 | 10 | 8 | 0.11 | 769484 | 60886150 | tier1 | Out-of-frame | 7658 | NA | 0.3711 |
| STAD | TCGA-CG-4443-01A | TCGA-CG-4443 | MCF2L|LAMA5 | MCF2L | LAMA5 | 13 | 20 | 1 | -1 | 12 | 15 | 14 | 0.22 | 113679072 | 60922084 | tier1 | In-frame | 10088 | non-validated | 0.37689 |
| LIHC | TCGA-FV-A495-01A | TCGA-FV-A495 | C16orf45|SMPDL3B | C16orf45 | SMPDL3B | 16 | 1 | 1 | 1 | 8 | 4 | 4 | 0.044 | 15528616 | 28284987 | tier1 | Out-of-frame | 2480 | validated | 0 |
| LIHC | TCGA-DD-A4NA-01A | TCGA-DD-A4NA | RHPN2|SLC7A10 | RHPN2 | SLC7A10 | 19 | 19 | -1 | -1 | 724 | 461 | 409 | 0.91 | 33535155 | 33703908 | tier1 | In-frame | 14668 | non-validated | 0 |
| DLBC | TCGA-FA-A86F-01A | TCGA-FA-A86F | C6orf72|PPIL4 | C6orf72 | PPIL4 | 6 | 6 | 1 | -1 | 6 | 9 | 8 | 0.56 | 149887670 | 149862567 | tier1 | In-frame | 2777 | NA | 0 |
| SARC | TCGA-DX-A1L0-01A | TCGA-DX-A1L0 | TIAM2|PPIL4 | TIAM2 | PPIL4 | 6 | 6 | 1 | -1 | 3 | 3 | 3 | 1.9 | 155486543 | 149826840 | tier1 | In-frame | 17822 | validated | 0 |
| BRCA | TCGA-A8-A07F-01A | TCGA-A8-A07F | LRP11|ULBP2 | LRP11 | ULBP2 | 6 | 6 | -1 | 1 | 10 | 3 | 3 | 100 | 150147400 | 150269859 | tier1 | CDS-3UTR | 9512 | NA | 0.3438 |
| BRCA | TCGA-JL-A3YW-01A | TCGA-JL-A3YW | KATNA1|LATS1 | KATNA1 | LATS1 | 6 | 6 | -1 | -1 | 2 | 1 | 1 | 1.8 | 149944239 | 150005728 | tier3 | Out-of-frame | 8553 | NA | 0.37849 |
| STAD | TCGA-VQ-AA6D-01A | TCGA-VQ-AA6D | NCOA6|GGT7 | NCOA6 | GGT7 | 20 | 20 | -1 | -1 | 2 | 58 | 49 | 0.25 | 33413275 | 33440341 | tier2 | 5UTR-CDS | 11220 | NA | 0.36719 |
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