TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
GBM	TCGA-06-5413-01A	TCGA-06-5413	AKAP6\|EGLN3	AKAP6	EGLN3	14	14	1	-1	32	118	107	0.25	32903023	34400421	tier1	In-frame	738	NA	0.35362
LUAD	TCGA-78-8660-01A	TCGA-78-8660	STRN3\|EGLN3	STRN3	EGLN3	14	14	-1	-1	20	12	11	0.12	31495110	34400421	tier1	In-frame	17115	NA	0
BRCA	TCGA-AR-A24K-01A	TCGA-AR-A24K	TOX3\|ITFG1	TOX3	ITFG1	16	16	-1	-1	27	12	10	1.3	52479906	47196575	tier2	Out-of-frame	18463	NA	0
SARC	TCGA-DX-A3LS-01A	TCGA-DX-A3LS	MLXIP\|ASH2L	MLXIP	ASH2L	12	8	1	1	85	15	15	0.048	122517172	37996334	tier1	Out-of-frame	10535	validated	0.36327
SARC	TCGA-DX-A3LS-01A	TCGA-DX-A3LS	TSPAN8\|ASH2L	TSPAN8	ASH2L	12	8	-1	1	41	20	18	0.53	71676496	37996334	tier1	5UTR-CDS	18804	validated	0
BRCA	TCGA-E9-A1RH-01A	TCGA-E9-A1RH	DDX5\|ART1	DDX5	ART1	17	11	-1	1	167	48	45	2.1	62499548	3685322	tier1	In-frame	4669	NA	0.37577
LUAD	TCGA-95-A4VN-01A	TCGA-95-A4VN	KTN1\|PRKCSH	KTN1	PRKCSH	14	19	1	1	2	6	2	0.38	56104565	11558508	tier4	In-frame	9171	NA	0.36314
PRAD	TCGA-VP-A872-01A	TCGA-VP-A872	DHCR24\|PRKCSH	DHCR24	PRKCSH	1	19	-1	1	2	119	102	0.34	55315306	11553201	tier3	3UTR-CDS	4777	NA	0.36044
BRCA	TCGA-AO-A129-01A	TCGA-AO-A129	TOMM40\|PVRL2	TOMM40	PVRL2	19	19	1	1	2	4	4	0.18	45394946	45375110	tier3	In-frame	18437	NA	0
PAAD	TCGA-3A-A9IU-01A	TCGA-3A-A9IU	CCDC9\|PVRL2	CCDC9	PVRL2	19	19	1	1	17	8	7	0.21	47764096	45368528	tier1	Out-of-frame	3187	NA	0.36729
SARC	TCGA-WP-A9GB-01A	TCGA-WP-A9GB	CLPTM1\|PVRL2	CLPTM1	PVRL2	19	19	1	1	10	10	9	0.021	45458724	45368528	tier1	Out-of-frame	3844	validated	0.36848
BRCA	TCGA-BH-A0W7-01A	TCGA-BH-A0W7	COG5\|DPP6	COG5	DPP6	7	7	-1	1	15	6	6	0.022	107052947	154519477	tier1	In-frame	3976	NA	0.34791
BRCA	TCGA-A2-A04U-01A	TCGA-A2-A04U	INSIG1\|DPP6	INSIG1	DPP6	7	7	1	1	2	19	11	0.15	155094556	154263927	tier2	In-frame	8255	NA	0.35233
LUAD	TCGA-78-7143-01A	TCGA-78-7143	GALNT11\|DPP6	GALNT11	DPP6	7	7	1	1	2	1	1	0.13	151722969	154143299	tier3	5UTR-CDS	6915	non-validated	0.34915
BLCA	TCGA-GV-A3JW-01A	TCGA-GV-A3JW	RUNDC2A\|NCAN	RUNDC2A	NCAN	16	19	1	1	13	16	14	1.8	12121301	19344598	tier1	In-frame	15176	NA	0
LUSC	TCGA-52-7809-01A	TCGA-52-7809	EFR3B\|NCAN	EFR3B	NCAN	2	19	1	1	2	2	2	0.028	25314270	19327756	tier3	5UTR-5UTR	5362	NA	0.37145
UCS	TCGA-N8-A4PL-01A	TCGA-N8-A4PL	ZNF675\|SLC27A1	ZNF675	SLC27A1	19	19	-1	1	6	4	4	0.08	23869833	17581349	tier1	CDS-5UTR	20618	NA	0
SARC	TCGA-DX-A6Z0-01A	TCGA-DX-A6Z0	ARMC2\|RTN4IP1	ARMC2	RTN4IP1	6	6	1	-1	2	1	1	0.26	109197553	107050797	tier2	In-frame	1414	NA	0.36194
BRCA	TCGA-AQ-A0Y5-01A	TCGA-AQ-A0Y5	LSM14A\|ACTN4	LSM14A	ACTN4	19	19	1	1	187	124	116	2.3	34663668	39191240	tier1	Out-of-frame	9629	NA	0.37602
ESCA	TCGA-L5-A8NI-01A	TCGA-L5-A8NI	AC011443.1\|ACTN4	AC011443.1	ACTN4	19	19	1	1	31	283	257	0.51	39576030	39195574	tier1	In-frame	164	NA	0.37315

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