Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-D8-A27H-01A | TCGA-D8-A27H | RALBP1|TWSG1 | RALBP1 | TWSG1 | 18 | 18 | 1 | 1 | 70 | 90 | 78 | 0.17 | 9475174 | 9337191 | tier1 | 5UTR-5UTR | 14215 | non-validated | 0 |
| BRCA | TCGA-E9-A1NF-01A | TCGA-E9-A1NF | SERINC3|TWSG1 | SERINC3 | TWSG1 | 20 | 18 | -1 | 1 | 3 | 2 | 2 | 0.17 | 43128899 | 9396278 | tier1 | 3UTR-CDS | 15639 | NA | 0 |
| LUAD | TCGA-55-7574-01A | TCGA-55-7574 | RBM17|TWSG1 | RBM17 | TWSG1 | 10 | 18 | 1 | 1 | 2 | 1 | 1 | 0.5 | 6131156 | 9337191 | tier3 | 5UTR-5UTR | 14448 | NA | 0 |
| STAD | TCGA-CG-4449-01A | TCGA-CG-4449 | VPS8|EIF2AK4 | VPS8 | EIF2AK4 | 3 | 15 | 1 | 1 | 9 | 10 | 8 | 0.28 | 184588593 | 40318178 | tier1 | In-frame | 19675 | NA | 0 |
| PRAD | TCGA-EJ-7783-01A | TCGA-EJ-7783 | CLDN12|SPCS3 | CLDN12 | SPCS3 | 7 | 4 | 1 | 1 | 2 | 10 | 6 | 0.048 | 90045268 | 177243321 | tier3 | 3UTR-CDS | 3772 | NA | 0.3447 |
| PRAD | TCGA-EJ-7123-01A | TCGA-EJ-7123 | GALNT7|SPCS3 | GALNT7 | SPCS3 | 4 | 4 | 1 | 1 | 26 | 17 | 12 | 0.058 | 174169591 | 177243321 | tier1 | In-frame | 6931 | NA | 0.33038 |
| CESC | TCGA-VS-A9UO-01A | TCGA-VS-A9UO | BTBD1|BBOX1 | BTBD1 | BBOX1 | 15 | 11 | -1 | 1 | 169 | 131 | 121 | 2.7 | 83710480 | 27114715 | tier1 | In-frame | 2255 | NA | 0.36392 |
| LGG | TCGA-FG-5963-01A | TCGA-FG-5963 | CELF1|BBOX1 | CELF1 | BBOX1 | 11 | 11 | -1 | 1 | 3 | 2 | 1 | 0.51 | 47586826 | 27141196 | tier2 | NA | 3492 | NA | 0.33568 |
| SARC | TCGA-VT-A80J-01A | TCGA-VT-A80J | PPFIA1|BBOX1 | PPFIA1 | BBOX1 | 11 | 11 | 1 | 1 | 6 | 8 | 6 | 1.2 | 70202360 | 27136999 | tier1 | In-frame | 13247 | NA | 0.3648 |
| SKCM | TCGA-DA-A1HW-06A | TCGA-DA-A1HW | SERGEF|KCNC1 | SERGEF | KCNC1 | 11 | 11 | -1 | 1 | 7 | 6 | 1 | 0.38 | 17981017 | 17793212 | tier2 | In-frame | 15628 | validated | 0 |
| SARC | TCGA-X6-A8C3-01A | TCGA-X6-A8C3 | SDHAF2|TPH1 | SDHAF2 | TPH1 | 11 | 11 | 1 | -1 | 8 | 2 | 2 | 1.3 | 61205585 | 18062335 | tier1 | In-frame | 15485 | NA | 0 |
| LUSC | TCGA-18-3415-01A | TCGA-18-3415 | RNF167|PLD2 | RNF167 | PLD2 | 17 | 17 | 1 | 1 | 2 | 4 | 2 | 0.006 | 4846236 | 4720441 | tier2 | Out-of-frame | 14779 | non-validated | 0 |
| SARC | TCGA-IE-A6BZ-01A | TCGA-IE-A6BZ | METTL16|FXR2 | METTL16 | FXR2 | 17 | 17 | -1 | -1 | 12 | 4 | 4 | 0.004 | 2405498 | 7509467 | tier1 | Out-of-frame | 10270 | NA | 0.36054 |
| BRCA | TCGA-OL-A5D6-01A | TCGA-OL-A5D6 | DNM2|SLC44A2 | DNM2 | SLC44A2 | 19 | 19 | 1 | 1 | 12 | 14 | 13 | 0.057 | 10886582 | 10736929 | tier1 | In-frame | 4990 | NA | 0.37726 |
| LIHC | TCGA-GJ-A6C0-01A | TCGA-GJ-A6C0 | DNM2|SLC44A2 | DNM2 | SLC44A2 | 19 | 19 | 1 | 1 | 6 | 3 | 3 | 0.057 | 10930765 | 10736929 | tier1 | Out-of-frame | 4989 | NA | 0.37726 |
| STAD | TCGA-BR-8373-01A | TCGA-BR-8373 | DNM2|SLC44A2 | DNM2 | SLC44A2 | 19 | 19 | 1 | 1 | 9 | 50 | 47 | 0.057 | 10893796 | 10745432 | tier1 | Out-of-frame | 4987 | validated | 0.37726 |
| UCEC | TCGA-E6-A8L9-01A | TCGA-E6-A8L9 | DNM2|SLC44A2 | DNM2 | SLC44A2 | 19 | 19 | 1 | 1 | 4 | 6 | 6 | 0.057 | 10870487 | 10736929 | tier1 | In-frame | 4988 | NA | 0.37726 |
| BLCA | TCGA-CF-A1HR-01A | TCGA-CF-A1HR | CIDEB|ADCY4 | CIDEB | ADCY4 | 14 | 14 | -1 | -1 | 3 | 1 | 1 | 0.038 | 24776577 | 24787984 | tier3 | Out-of-frame | 3733 | NA | 0.35195 |
| BRCA | TCGA-A1-A0SO-01A | TCGA-A1-A0SO | PABPN1|BCL2L2 | PABPN1 | BCL2L2 | 14 | 14 | 1 | 1 | 11 | 25 | 25 | 0.008 | 23792692 | 23780182 | tier1 | NA | 12165 | NA | 0.3639 |
| CESC | TCGA-FU-A3TX-01A | TCGA-FU-A3TX | LONP2|EGLN3 | LONP2 | EGLN3 | 16 | 14 | 1 | -1 | 7 | 3 | 3 | 2.2 | 48304185 | 34638852 | tier1 | NA | 9431 | NA | 0.35126 |
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