Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-DX-A48N-01A | TCGA-DX-A48N | OSTF1|SMARCA4 | OSTF1 | SMARCA4 | 9 | 19 | 1 | 1 | 124 | 76 | 67 | 0.022 | 77703642 | 11141406 | tier1 | In-frame | 12107 | NA | 0.38244 |
| UCEC | TCGA-AJ-A6NU-01A | TCGA-AJ-A6NU | USP34|KDM4B | USP34 | KDM4B | 2 | 19 | -1 | 1 | 26 | 27 | 22 | 0.19 | 61697785 | 5119129 | tier1 | Out-of-frame | 19364 | NA | 0 |
| ACC | TCGA-P6-A5OF-01A | TCGA-P6-A5OF | DCP2|IL17B | DCP2 | IL17B | 5 | 5 | 1 | -1 | 22 | 11 | 11 | 0.76 | 112328467 | 148756588 | tier1 | In-frame | 4608 | NA | 0.35883 |
| SKCM | TCGA-EB-A5KH-06A | TCGA-EB-A5KH | DPYSL3|IL17B | DPYSL3 | IL17B | 5 | 5 | -1 | -1 | 9 | 6 | 6 | 0.47 | 146889041 | 148756588 | tier1 | In-frame | 5104 | NA | 0.35431 |
| STAD | TCGA-BR-8485-01A | TCGA-BR-8485 | PPARGC1B|IL17B | PPARGC1B | IL17B | 5 | 5 | 1 | -1 | 2 | 3 | 1 | 0.26 | 149206448 | 148756588 | tier2 | In-frame | 13237 | NA | 0.3706 |
| READ | TCGA-DC-4745-01A | TCGA-DC-4745 | SPATA13|TNFRSF19 | SPATA13 | TNFRSF19 | 13 | 13 | 1 | 1 | 101 | 95 | 81 | 4.4 | 24735071 | 24164289 | tier1 | 5UTR-5UTR | 16670 | NA | 0 |
| SARC | TCGA-PC-A5DM-01A | TCGA-PC-A5DM | STXBP5|TNFRSF19 | STXBP5 | TNFRSF19 | 6 | 13 | 1 | 1 | 12 | 6 | 6 | 0.078 | 147660520 | 24247511 | tier1 | Out-of-frame | 17151 | NA | 0 |
| MESO | TCGA-3H-AB3M-01A | TCGA-3H-AB3M | ZCCHC8|PTPN12 | ZCCHC8 | PTPN12 | 12 | 7 | -1 | 1 | 3 | 6 | 6 | 1.9 | 122964737 | 77261665 | tier1 | Out-of-frame | 20176 | NA | 0 |
| PRAD | TCGA-ZG-A9KY-01A | TCGA-ZG-A9KY | AC005522.1|POR | AC005522.1 | POR | 7 | 7 | 1 | 1 | 4 | 62 | 60 | 0.071 | 76093026 | 75583307 | tier1 | 5UTR-5UTR | 141 | NA | 0.34211 |
| GBM | TCGA-06-0130-01A | TCGA-06-0130 | PION|STYXL1 | PION | STYXL1 | 7 | 7 | -1 | -1 | 2 | 3 | 3 | 0.015 | 77006165 | 75634722 | tier3 | In-frame | 12860 | NA | 0.36047 |
| SKCM | TCGA-FR-A7UA-06A | TCGA-FR-A7UA | PPFIA1|SRD5A3 | PPFIA1 | SRD5A3 | 11 | 4 | 1 | 1 | 5 | 3 | 3 | 0.064 | 70176425 | 56225513 | tier1 | Out-of-frame | 13267 | NA | 0.3644 |
| GBM | TCGA-27-1830-01A | TCGA-27-1830 | PIGG|SPINK2 | PIGG | SPINK2 | 4 | 4 | 1 | -1 | 3 | 7 | 6 | 1 | 502759 | 57676350 | tier1 | Out-of-frame | 12809 | NA | 0.33936 |
| LGG | TCGA-HT-7477-01B | TCGA-HT-7477 | SCFD2|SPINK2 | SCFD2 | SPINK2 | 4 | 4 | -1 | -1 | 8 | 6 | 4 | 0.085 | 54011500 | 57686745 | tier1 | In-frame | 15405 | NA | 0 |
| PAAD | TCGA-YB-A89D-01A | TCGA-YB-A89D | OSBP2|TST | OSBP2 | TST | 22 | 22 | 1 | -1 | 8 | 4 | 3 | 0.079 | 31289720 | 37407366 | tier2 | Out-of-frame | 12064 | NA | 0.36099 |
| UCS | TCGA-N9-A4PZ-01A | TCGA-N9-A4PZ | RBFOX2|TST | RBFOX2 | TST | 22 | 22 | -1 | -1 | 22 | 14 | 14 | 0.44 | 36424288 | 37407366 | tier1 | Out-of-frame | 14432 | NA | 0 |
| BRCA | TCGA-AR-A0U4-01A | TCGA-AR-A0U4 | ZKSCAN5|SMO | ZKSCAN5 | SMO | 7 | 7 | 1 | 1 | 28 | 13 | 11 | 0.58 | 99110214 | 128843225 | tier1 | In-frame | 20312 | NA | 0 |
| LIHC | TCGA-FV-A496-01A | TCGA-FV-A496 | AGPS|PDE11A | AGPS | PDE11A | 2 | 2 | 1 | -1 | 2 | 2 | 2 | 0.35 | 178299145 | 178576606 | tier3 | In-frame | 664 | non-validated | 0.34602 |
| LUSC | TCGA-18-4721-01A | TCGA-18-4721 | NFE2L2|PDE11A | NFE2L2 | PDE11A | 2 | 2 | -1 | -1 | 11 | 10 | 8 | 0.45 | 178097120 | 178634101 | tier1 | In-frame | 11457 | non-validated | 0.3691 |
| UCEC | TCGA-AJ-A3NF-01A | TCGA-AJ-A3NF | RIF1|PDE11A | RIF1 | PDE11A | 2 | 2 | 1 | -1 | 8 | 5 | 5 | 1.6 | 152318980 | 178592900 | tier1 | In-frame | 14685 | NA | 0 |
| LIHC | TCGA-XR-A8TG-01A | TCGA-XR-A8TG | CERS6|GAD1 | CERS6 | GAD1 | 2 | 2 | 1 | 1 | 2 | 2 | 2 | 0.88 | 169487552 | 171715314 | tier2 | In-frame | 3577 | NA | 0.35487 |
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