Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| ESCA | TCGA-L5-A891-01A | TCGA-L5-A891 | PPP1R13L|MBOAT7 | PPP1R13L | MBOAT7 | 19 | 19 | -1 | -1 | 4 | 3 | 2 | 0.08 | 45885785 | 54678125 | tier1 | Out-of-frame | 13371 | non-validated | 0.36486 |
| LUAD | TCGA-75-5125-01A | TCGA-75-5125 | HNRNPM|SLC25A23 | HNRNPM | SLC25A23 | 19 | 19 | 1 | -1 | 119 | 59 | 54 | 1.1 | 8509995 | 6438545 | tier1 | CDS-3UTR | 7907 | NA | 0.37708 |
| LUAD | TCGA-55-7913-01B | TCGA-55-7913 | STAG2|GRIA3 | STAG2 | GRIA3 | X | X | 1 | 1 | 8 | 5 | 5 | 1.1 | 123164975 | 122459877 | tier1 | Out-of-frame | 16989 | NA | 0 |
| BRCA | TCGA-AO-A03N-01B | TCGA-AO-A03N | KHSRP|CD70 | KHSRP | CD70 | 19 | 19 | -1 | -1 | 3 | 3 | 3 | 0.1 | 6418494 | 6590147 | tier1 | In-frame | 8723 | non-validated | 0.37242 |
| BRCA | TCGA-A2-A0YJ-01A | TCGA-A2-A0YJ | ILF3|C3 | ILF3 | C3 | 19 | 19 | 1 | -1 | 7 | 26 | 25 | 0.32 | 10765163 | 6697805 | tier1 | 5UTR-CDS | 8207 | NA | 0.38011 |
| HNSC | TCGA-CN-4733-01A | TCGA-CN-4733 | EPB41L1|TGM3 | EPB41L1 | TGM3 | 20 | 20 | 1 | 1 | 14 | 15 | 9 | 0.23 | 34680735 | 2290303 | tier1 | 5UTR-CDS | 5646 | NA | 0.36694 |
| SKCM | TCGA-GN-A8LN-01A | TCGA-GN-A8LN | SGSM3|DEFB126 | SGSM3 | DEFB126 | 22 | 20 | 1 | 1 | 18 | 17 | 16 | 100 | 40766692 | 126056 | tier1 | 5UTR-CDS | 15794 | NA | 0 |
| SKCM | TCGA-ER-A19L-06A | TCGA-ER-A19L | SNX5|PCSK2 | SNX5 | PCSK2 | 20 | 20 | -1 | 1 | 49 | 33 | 33 | 4.7 | 17933231 | 17338972 | tier1 | In-frame | 16564 | non-validated | 0 |
| LUSC | TCGA-46-6025-01A | TCGA-46-6025 | UQCC|GDF5 | UQCC | GDF5 | 20 | 20 | -1 | -1 | 5 | 11 | 10 | 4 | 33999743 | 34022581 | tier1 | Out-of-frame | 19280 | NA | 0 |
| BRCA | TCGA-A8-A08J-01A | TCGA-A8-A08J | ADNP|MMP24 | ADNP | MMP24 | 20 | 20 | -1 | 1 | 2 | 11 | 11 | 0.28 | 49518554 | 33862075 | tier3 | Out-of-frame | 529 | NA | 0.36095 |
| LUSC | TCGA-22-A5C4-01A | TCGA-22-A5C4 | MKKS|MMP24 | MKKS | MMP24 | 20 | 20 | -1 | 1 | 4 | 8 | 8 | 1.5 | 10414756 | 33834643 | tier1 | 5UTR-CDS | 10396 | NA | 0.36316 |
| HNSC | TCGA-CQ-6227-01A | TCGA-CQ-6227 | FRMD6|BPIFB1 | FRMD6 | BPIFB1 | 14 | 20 | 1 | 1 | 171 | 30 | 28 | 0.3 | 52037128 | 31873839 | tier1 | 5UTR-5UTR | 6729 | NA | 0.3641 |
| BRCA | TCGA-BH-A1FC-01A | TCGA-BH-A1FC | KAZN|ST3GAL3 | KAZN | ST3GAL3 | 1 | 1 | 1 | 1 | 12 | 2 | 2 | 0.15 | 15287371 | 44360055 | tier1 | Out-of-frame | 8559 | non-validated | 0.3505 |
| CESC | TCGA-ZJ-AAXN-01A | TCGA-ZJ-AAXN | CCDC24|ST3GAL3 | CCDC24 | ST3GAL3 | 1 | 1 | 1 | 1 | 3 | 3 | 3 | 0.44 | 44457676 | 44201904 | tier1 | CDS-5UTR | 3134 | NA | 0.35495 |
| ESCA | TCGA-VR-A8EX-01A | TCGA-VR-A8EX | RNF19A|F10 | RNF19A | F10 | 8 | 13 | -1 | 1 | 2 | 3 | 3 | 0.81 | 101299729 | 113792771 | tier2 | Out-of-frame | 14801 | NA | 0 |
| LGG | TCGA-HT-7687-01A | TCGA-HT-7687 | NUMA1|UBA2 | NUMA1 | UBA2 | 11 | 19 | -1 | 1 | 2 | 7 | 1 | 0.21 | 71713911 | 34919781 | tier4 | 3UTR-5UTR | 11897 | NA | 0.36325 |
| CHOL | TCGA-ZH-A8Y4-01A | TCGA-ZH-A8Y4 | CASC3|THRA | CASC3 | THRA | 17 | 17 | 1 | 1 | 45 | 13 | 12 | 0.24 | 38324670 | 38249273 | tier1 | In-frame | 3008 | NA | 0.37184 |
| STAD | TCGA-D7-8573-01A | TCGA-D7-8573 | WIPF2|THRA | WIPF2 | THRA | 17 | 17 | 1 | 1 | 7 | 35 | 30 | 0.11 | 38375744 | 38230445 | tier4 | 5UTR-5UTR | 19875 | NA | 0 |
| BRCA | TCGA-BH-A0BZ-01A | TCGA-BH-A0BZ | SYNRG|CCR7 | SYNRG | CCR7 | 17 | 17 | -1 | -1 | 9 | 4 | 3 | 0.63 | 35921297 | 38715194 | tier1 | In-frame | 17260 | NA | 0 |
| PRAD | TCGA-HC-7209-01A | TCGA-HC-7209 | AARSD1|CCR7 | AARSD1 | CCR7 | 17 | 17 | -1 | -1 | 23 | 5 | 5 | 0.048 | 41113209 | 38715194 | tier1 | In-frame | 19 | NA | 0.36006 |
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