Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-A1-A0SJ-01A | TCGA-A1-A0SJ | TANC2|CHD6 | TANC2 | CHD6 | 17 | 20 | 1 | -1 | 32 | 54 | 53 | 0.11 | 61086987 | 40086068 | tier1 | Out-of-frame | 17370 | NA | 0 |
| LIHC | TCGA-DD-A73B-01A | TCGA-DD-A73B | ZHX3|CHD6 | ZHX3 | CHD6 | 20 | 20 | -1 | -1 | 15 | 9 | 8 | 0.32 | 39830697 | 40034129 | tier1 | Out-of-frame | 20309 | NA | 0 |
| LUAD | TCGA-97-A4M3-01A | TCGA-97-A4M3 | LRP5|CHD6 | LRP5 | CHD6 | 11 | 20 | 1 | -1 | 9 | 2 | 2 | 0.57 | 68131411 | 40086068 | tier1 | Out-of-frame | 9530 | NA | 0.37646 |
| BRCA | TCGA-AR-A0TX-01A | TCGA-AR-A0TX | PMEPA1|PTGIS | PMEPA1 | PTGIS | 20 | 20 | -1 | -1 | 42 | 26 | 26 | 1.2 | 56284530 | 48130932 | tier1 | Out-of-frame | 13089 | non-validated | 0.35437 |
| BRCA | TCGA-A2-A3XW-01A | TCGA-A2-A3XW | RIMS2|PTGIS | RIMS2 | PTGIS | 8 | 20 | 1 | -1 | 3 | 3 | 2 | 2 | 105161076 | 48160985 | tier1 | Out-of-frame | 14698 | NA | 0 |
| KIRP | TCGA-P4-A5EB-01A | TCGA-P4-A5EB | MARCH6|MTRR | MARCH6 | MTRR | 5 | 5 | 1 | 1 | 10 | 8 | 8 | 0.15 | 10394897 | 7883268 | tier1 | In-frame | 9986 | NA | 0 |
| MESO | TCGA-TS-A7P1-01A | TCGA-TS-A7P1 | PAPD7|MTRR | PAPD7 | MTRR | 5 | 5 | 1 | 1 | 2 | 3 | 2 | 0.011 | 6714812 | 7889208 | tier2 | 5UTR-CDS | 12249 | NA | 0.33881 |
| PRAD | TCGA-EJ-7327-01A | TCGA-EJ-7327 | GPBP1|MTRR | GPBP1 | MTRR | 5 | 5 | 1 | 1 | 44 | 39 | 35 | 0.15 | 56527148 | 7889208 | tier1 | In-frame | 7319 | NA | 0.34891 |
| BLCA | TCGA-GV-A3QF-01A | TCGA-GV-A3QF | RHPN2|PEPD | RHPN2 | PEPD | 19 | 19 | -1 | -1 | 74 | 63 | 59 | 0.94 | 33535155 | 33904549 | tier1 | In-frame | 14667 | NA | 0 |
| LIHC | TCGA-UB-A7MA-01A | TCGA-UB-A7MA | SUGP1|PEPD | SUGP1 | PEPD | 19 | 19 | -1 | -1 | 12 | 13 | 11 | 1.8 | 19427231 | 33904549 | tier1 | In-frame | 17168 | NA | 0 |
| MESO | TCGA-MQ-A4LP-01A | TCGA-MQ-A4LP | C19orf25|PEPD | C19orf25 | PEPD | 19 | 19 | -1 | -1 | 15 | 19 | 15 | 0.046 | 1478773 | 33882385 | tier1 | In-frame | 2573 | NA | 0 |
| PRAD | TCGA-ZG-A9LZ-01A | TCGA-ZG-A9LZ | C19orf2|PEPD | C19orf2 | PEPD | 19 | 19 | 1 | -1 | 17 | 11 | 10 | 2.2 | 30462134 | 33904549 | tier1 | 5UTR-CDS | 2556 | NA | 0 |
| STAD | TCGA-CD-A4MH-01A | TCGA-CD-A4MH | RHPN2|PEPD | RHPN2 | PEPD | 19 | 19 | -1 | -1 | 7 | 77 | 64 | 0.94 | 33481420 | 33984243 | tier1 | In-frame | 14666 | NA | 0 |
| UCEC | TCGA-EY-A4KR-01A | TCGA-EY-A4KR | ANKRD27|PEPD | ANKRD27 | PEPD | 19 | 19 | -1 | -1 | 6 | 9 | 8 | 3.9 | 33118989 | 33902655 | tier1 | Out-of-frame | 976 | NA | 0.35054 |
| SARC | TCGA-SI-AA8C-01A | TCGA-SI-AA8C | PSMF1|CHST8 | PSMF1 | CHST8 | 20 | 19 | 1 | 1 | 32 | 27 | 24 | 0.11 | 1106293 | 34180082 | tier1 | CDS-5UTR | 13733 | NA | 0.35749 |
| BLCA | TCGA-DK-A2I1-01A | TCGA-DK-A2I1 | DGUOK|STAMBP | DGUOK | STAMBP | 2 | 2 | 1 | 1 | 15 | 14 | 10 | 0.006 | 74154179 | 74086381 | tier1 | Out-of-frame | 4764 | NA | 0.3653 |
| LUSC | TCGA-NC-A5HL-01A | TCGA-NC-A5HL | DGUOK|STAMBP | DGUOK | STAMBP | 2 | 2 | 1 | 1 | 46 | 25 | 23 | 0.006 | 74174033 | 74100479 | tier1 | CDS-3UTR | 4765 | NA | 0.3653 |
| UCEC | TCGA-E6-A8L9-01A | TCGA-E6-A8L9 | SPECC1|STAMBP | SPECC1 | STAMBP | 17 | 2 | 1 | 1 | 23 | 22 | 18 | 6.8 | 20163607 | 74100479 | tier1 | CDS-3UTR | 16689 | NA | 0 |
| PRAD | TCGA-CH-5751-01A | TCGA-CH-5751 | C9orf102|ATP8A1 | C9orf102 | ATP8A1 | 9 | 4 | 1 | -1 | 4 | 2 | 2 | 0.032 | 98718295 | 42526864 | tier1 | In-frame | 2812 | NA | 0 |
| LIHC | TCGA-CC-A3M9-01A | TCGA-CC-A3M9 | RREB1|F13A1 | RREB1 | F13A1 | 6 | 6 | 1 | -1 | 12 | 8 | 8 | 0.1 | 7108293 | 6318915 | tier1 | 5UTR-5UTR | 15125 | NA | 0 |
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