TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
UCS	TCGA-NA-A4QV-01A	TCGA-NA-A4QV	SARNP\|MMP19	SARNP	MMP19	12	12	-1	-1	2	7	7	0.96	56211450	56236222	tier2	In-frame	15311	NA	0
SARC	TCGA-DX-A8BV-01A	TCGA-DX-A8BV	MRRF\|NR4A1	MRRF	NR4A1	9	12	1	1	2	2	2	0.006	125027217	52448111	tier2	5UTR-5UTR	10690	NA	0.38021
SARC	TCGA-HB-A3YV-01A	TCGA-HB-A3YV	CNKSR3\|PLP1	CNKSR3	PLP1	6	X	-1	1	2	4	4	4.5	154831197	103031781	tier2	CDS-5UTR	3907	NA	0.34729
SARC	TCGA-HB-A3YV-01A	TCGA-HB-A3YV	TBC1D30\|PLP1	TBC1D30	PLP1	12	X	1	1	4	2	2	0.24	65222289	103031781	tier1	5UTR-5UTR	17493	NA	0
SARC	TCGA-X6-A8C2-01A	TCGA-X6-A8C2	RIF1\|TNFAIP6	RIF1	TNFAIP6	2	2	1	1	2	3	3	0.042	152326378	152220457	tier2	Out-of-frame	14686	NA	0
BRCA	TCGA-BH-A18T-01A	TCGA-BH-A18T	WDSUB1\|BAZ2B	WDSUB1	BAZ2B	2	2	-1	-1	7	6	6	0.013	160136272	160189197	tier1	Out-of-frame	19817	NA	0
LUSC	TCGA-NC-A5HJ-01A	TCGA-NC-A5HJ	WDSUB1\|BAZ2B	WDSUB1	BAZ2B	2	2	-1	-1	2	2	2	0.013	160104883	160269056	tier3	Out-of-frame	19818	NA	0
LUSC	TCGA-94-8491-01A	TCGA-94-8491	G3BP1\|SLC36A1	G3BP1	SLC36A1	5	5	1	1	15	9	5	0.61	151151597	150856151	tier1	5UTR-CDS	6876	NA	0.37043
BRCA	TCGA-A1-A0SN-01A	TCGA-A1-A0SN	MED13\|KCNJ2	MED13	KCNJ2	17	17	-1	1	44	39	39	0.16	60142501	68170965	tier1	CDS-5UTR	10171	NA	0.3665
LGG	TCGA-P5-A5F2-01A	TCGA-P5-A5F2	PPM1A\|ADCK4	PPM1A	ADCK4	14	19	1	-1	2	9	4	0.71	60716395	41220302	tier2	5UTR-CDS	13304	NA	0.36525
LUSC	TCGA-43-7657-01A	TCGA-43-7657	RAB4B\|ADCK4	RAB4B	ADCK4	19	19	1	-1	90	84	79	0.028	41284296	41201959	tier1	Out-of-frame	14113	NA	0
BRCA	TCGA-AO-A0J2-01A	TCGA-AO-A0J2	CCDC109B\|C4BPA	CCDC109B	C4BPA	4	1	1	1	6	1	1	100	110481592	207317163	tier2	Out-of-frame	3105	non-validated	0.35918
LIHC	TCGA-G3-A7M7-01A	TCGA-G3-A7M7	DDI2\|C4BPB	DDI2	C4BPB	1	1	1	1	67	80	68	0.12	15944303	207262827	tier1	CDS-5UTR	4636	NA	0.35203
UCEC	TCGA-EO-A3AV-01A	TCGA-EO-A3AV	FARP2\|INHA	FARP2	INHA	2	2	1	1	15	7	6	0.73	242312705	220439416	tier1	Out-of-frame	6246	NA	0.37206
BLCA	TCGA-BT-A20W-01A	TCGA-BT-A20W	RANBP10\|SLC12A4	RANBP10	SLC12A4	16	16	-1	-1	5	2	2	3.1	67805937	67988676	tier1	In-frame	14250	NA	0
LUAD	TCGA-MP-A4T4-01A	TCGA-MP-A4T4	RANBP10\|SLC12A4	RANBP10	SLC12A4	16	16	-1	-1	3	1	1	3.1	67778191	67986328	tier3	Out-of-frame	14251	NA	0
OV	TCGA-23-1024-01A	TCGA-23-1024	ZNF350\|SLC12A5	ZNF350	SLC12A5	19	20	-1	1	5	2	2	6.1	52477599	44669012	tier1	In-frame	20473	NA	0
BRCA	TCGA-C8-A8HP-01A	TCGA-C8-A8HP	PRPF6\|SDC4	PRPF6	SDC4	20	20	1	-1	10	6	5	0.28	62626445	43964560	tier1	In-frame	13607	NA	0.37263
BLCA	TCGA-C4-A0F7-01A	TCGA-C4-A0F7	TCF12\|NCOA3	TCF12	NCOA3	15	20	1	1	19	20	19	0.5	57213296	46211927	tier1	CDS-5UTR	17583	non-validated	0
BRCA	TCGA-E2-A106-01A	TCGA-E2-A106	PCMTD2\|CHD6	PCMTD2	CHD6	20	20	1	-1	22	11	11	0.43	62899363	40179999	tier1	CDS-5UTR	12421	NA	0.35779

Showing page 398

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