Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
| Showing page 397 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| UCEC | TCGA-PG-A915-01A | TCGA-PG-A915 | NFX1|SPINK4 | NFX1 | SPINK4 | 9 | 9 | 1 | 1 | 3 | 3 | 2 | 0.3 | 33344186 | 33245110 | tier1 | In-frame | 11524 | NA | 0.36475 |
| LGG | TCGA-S9-A7R1-01A | TCGA-S9-A7R1 | KDM4C|KIAA1045 | KDM4C | KIAA1045 | 9 | 9 | 1 | 1 | 5 | 3 | 3 | 0.078 | 6893232 | 34976149 | tier1 | In-frame | 8684 | NA | 0.33483 |
| SARC | TCGA-DX-A1KY-01A | TCGA-DX-A1KY | PBX1|KIAA1045 | PBX1 | KIAA1045 | 1 | 9 | 1 | 1 | 5 | 2 | 2 | 0.39 | 164532548 | 34971292 | tier4 | CDS-5UTR | 12345 | NA | 0.36833 |
| LUAD | TCGA-05-4398-01A | TCGA-05-4398 | SYPL1|AKR1D1 | SYPL1 | AKR1D1 | 7 | 7 | -1 | 1 | 71 | 92 | 68 | 100 | 105738136 | 137782612 | tier1 | In-frame | 17266 | non-validated | 0 |
| SARC | TCGA-DX-A23Z-01A | TCGA-DX-A23Z | ZMIZ1|CHST3 | ZMIZ1 | CHST3 | 10 | 10 | 1 | 1 | 7 | 1 | 1 | 0.013 | 80878781 | 73765494 | tier2 | 5UTR-5UTR | 20321 | NA | 0 |
| SKCM | TCGA-FW-A3TU-06A | TCGA-FW-A3TU | MPRIP|P4HA1 | MPRIP | P4HA1 | 17 | 10 | 1 | -1 | 3 | 7 | 7 | 6.2 | 16946285 | 74790128 | tier1 | Out-of-frame | 10630 | NA | 0.36888 |
| BRCA | TCGA-AO-A03V-01A | TCGA-AO-A03V | DNAJB12|SLC25A16 | DNAJB12 | SLC25A16 | 10 | 10 | -1 | -1 | 80 | 61 | 55 | 0.022 | 74114523 | 70266475 | tier1 | In-frame | 4928 | NA | 0.34412 |
| BRCA | TCGA-C8-A26X-01A | TCGA-C8-A26X | PPTC7|HVCN1 | PPTC7 | HVCN1 | 12 | 12 | -1 | -1 | 204 | 175 | 157 | 0.013 | 110989594 | 111065981 | tier1 | Out-of-frame | 13478 | NA | 0.3407 |
| UCS | TCGA-N9-A4Q7-01A | TCGA-N9-A4Q7 | PPTC7|HVCN1 | PPTC7 | HVCN1 | 12 | 12 | -1 | -1 | 21 | 7 | 7 | 0.013 | 110983685 | 111065981 | tier1 | Out-of-frame | 13479 | NA | 0.3407 |
| BRCA | TCGA-A7-A4SD-01A | TCGA-A7-A4SD | ARNTL2|ITPR2 | ARNTL2 | ITPR2 | 12 | 12 | 1 | -1 | 4 | 1 | 1 | 0.52 | 27543172 | 26596583 | tier2 | Out-of-frame | 1439 | NA | 0.37187 |
| BRCA | TCGA-E2-A1LL-01A | TCGA-E2-A1LL | KIAA0528|ITPR2 | KIAA0528 | ITPR2 | 12 | 12 | -1 | -1 | 51 | 29 | 27 | 0.48 | 22666228 | 26493261 | tier1 | In-frame | 8791 | non-validated | 0.36546 |
| LUAD | TCGA-55-6986-01A | TCGA-55-6986 | DNM1L|ITPR2 | DNM1L | ITPR2 | 12 | 12 | 1 | -1 | 9 | 5 | 3 | 1.7 | 32832399 | 26589279 | tier1 | Out-of-frame | 4965 | non-validated | 0.37381 |
| LUSC | TCGA-85-8584-01A | TCGA-85-8584 | C12orf35|ITPR2 | C12orf35 | ITPR2 | 12 | 12 | 1 | -1 | 33 | 17 | 13 | 0.19 | 32113805 | 26540527 | tier1 | 5UTR-CDS | 2417 | NA | 0 |
| STAD | TCGA-D7-8575-01A | TCGA-D7-8575 | ETNK1|ITPR2 | ETNK1 | ITPR2 | 12 | 12 | 1 | -1 | 7 | 59 | 56 | 0.24 | 22826594 | 26634174 | tier1 | In-frame | 5852 | NA | 0.36324 |
| LIHC | TCGA-BC-4072-01B | TCGA-BC-4072 | ANXA4|PKN1 | ANXA4 | PKN1 | 2 | 19 | 1 | 1 | 1077 | 695 | 603 | 2.9 | 70008706 | 14578377 | tier1 | In-frame | 1047 | NA | 0.3846 |
| LUSC | TCGA-43-7658-01A | TCGA-43-7658 | TECR|PKN1 | TECR | PKN1 | 19 | 19 | 1 | 1 | 179 | 153 | 146 | 0.037 | 14640523 | 14574479 | tier1 | In-frame | 17651 | NA | 0 |
| SKCM | TCGA-ER-A19M-06A | TCGA-ER-A19M | CTD-2006C1.2|PKN1 | CTD-2006C1.2 | PKN1 | 19 | 19 | 1 | 1 | 16 | 9 | 9 | 1.7 | 12098638 | 14551955 | tier1 | 5UTR-CDS | 4315 | NA | 0.38382 |
| UCEC | TCGA-A5-A3LP-01A | TCGA-A5-A3LP | TECR|PKN1 | TECR | PKN1 | 19 | 19 | 1 | 1 | 122 | 97 | 90 | 0.037 | 14640523 | 14580153 | tier1 | Out-of-frame | 17652 | NA | 0 |
| PAAD | TCGA-HZ-A49I-01A | TCGA-HZ-A49I | FRS2|MMP19 | FRS2 | MMP19 | 12 | 12 | 1 | -1 | 8 | 2 | 2 | 1.9 | 69864310 | 56236222 | tier1 | 5UTR-CDS | 6765 | NA | 0.38116 |
| SARC | TCGA-HB-A43Z-01A | TCGA-HB-A43Z | SARNP|MMP19 | SARNP | MMP19 | 12 | 12 | -1 | -1 | 5 | 14 | 13 | 0.96 | 56211450 | 56236222 | tier1 | In-frame | 15310 | non-validated | 0 |
|
Showing page 397 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.