Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-C8-A26X-01A | TCGA-C8-A26X | TBL1XR1|PIK3CA | TBL1XR1 | PIK3CA | 3 | 3 | -1 | 1 | 7 | 21 | 19 | 0.21 | 176914909 | 178916538 | tier1 | 5UTR-5UTR | 17552 | NA | 0 |
| BRCA | TCGA-E2-A14P-01A | TCGA-E2-A14P | TBL1XR1|PIK3CA | TBL1XR1 | PIK3CA | 3 | 3 | -1 | 1 | 2 | 9 | 9 | 0.21 | 176914909 | 178916538 | tier2 | 5UTR-5UTR | 17553 | non-validated | 0 |
| BRCA | TCGA-E2-A14P-01A | TCGA-E2-A14P | USP13|PIK3CA | USP13 | PIK3CA | 3 | 3 | 1 | 1 | 6 | 3 | 3 | 0.064 | 179418917 | 178941869 | tier1 | In-frame | 19309 | non-validated | 0 |
| PRAD | TCGA-EJ-5507-01A | TCGA-EJ-5507 | TBL1XR1|PIK3CA | TBL1XR1 | PIK3CA | 3 | 3 | -1 | 1 | 10 | 19 | 18 | 0.21 | 176914909 | 178916538 | tier1 | 5UTR-5UTR | 17554 | NA | 0 |
| UCEC | TCGA-BK-A56F-01A | TCGA-BK-A56F | FNDC3B|PIK3CA | FNDC3B | PIK3CA | 3 | 3 | 1 | 1 | 8 | 18 | 16 | 0.06 | 171851336 | 178916538 | tier1 | CDS-5UTR | 6612 | NA | 0.37884 |
| BRCA | TCGA-A2-A0YE-01A | TCGA-A2-A0YE | GDAP2|ADORA3 | GDAP2 | ADORA3 | 1 | 1 | -1 | -1 | 2 | 2 | 2 | 0.68 | 118420631 | 112043178 | tier4 | Out-of-frame | 7018 | NA | 0.35749 |
| LUAD | TCGA-50-5066-01A | TCGA-50-5066 | TMED5|ADORA3 | TMED5 | ADORA3 | 1 | 1 | -1 | -1 | 3 | 2 | 2 | 0.41 | 93645611 | 112028462 | tier1 | Out-of-frame | 17918 | non-validated | 0 |
| PRAD | TCGA-KK-A59X-01A | TCGA-KK-A59X | ARGLU1|CXCR4 | ARGLU1 | CXCR4 | 13 | 2 | -1 | -1 | 4 | 5 | 3 | 0.8 | 107219921 | 136873482 | tier1 | Out-of-frame | 1204 | NA | 0.38298 |
| COAD | TCGA-AA-3712-01A | TCGA-AA-3712 | PAN3|FLT3 | PAN3 | FLT3 | 13 | 13 | 1 | -1 | 11 | 17 | 16 | 0.19 | 28752072 | 28644749 | tier1 | Out-of-frame | 12230 | NA | 0.3767 |
| SARC | TCGA-HS-A5NA-01A | TCGA-HS-A5NA | PAN3|FLT3 | PAN3 | FLT3 | 13 | 13 | 1 | -1 | 4 | 6 | 6 | 0.19 | 28713224 | 28644749 | tier1 | 5UTR-CDS | 12231 | NA | 0.3767 |
| BRCA | TCGA-A2-A1FW-01A | TCGA-A2-A1FW | POGK|FMOD | POGK | FMOD | 1 | 1 | 1 | -1 | 92 | 68 | 57 | 0.061 | 166810325 | 203311622 | tier1 | Out-of-frame | 13135 | NA | 0.367 |
| CHOL | TCGA-4G-AAZO-01A | TCGA-4G-AAZO | RASAL2|COPA | RASAL2 | COPA | 1 | 1 | 1 | -1 | 19 | 14 | 13 | 0.15 | 178269253 | 160310084 | tier1 | In-frame | 14365 | NA | 0 |
| SKCM | TCGA-EE-A3AH-06A | TCGA-EE-A3AH | KIFAP3|COPA | KIFAP3 | COPA | 1 | 1 | -1 | -1 | 2 | 6 | 6 | 0.2 | 169923152 | 160282957 | tier2 | In-frame | 9020 | NA | 0.37777 |
| SARC | TCGA-DX-A7EU-01A | TCGA-DX-A7EU | ARRB1|LY9 | ARRB1 | LY9 | 11 | 1 | -1 | 1 | 13 | 11 | 9 | 0.29 | 75062632 | 160783426 | tier1 | Out-of-frame | 1454 | NA | 0.37585 |
| DLBC | TCGA-GS-A9TY-01A | TCGA-GS-A9TY | C7orf46|KLHL7 | C7orf46 | KLHL7 | 7 | 7 | 1 | 1 | 5 | 4 | 4 | 0.17 | 23731215 | 23157453 | tier1 | CDS-5UTR | 2791 | NA | 0 |
| ESCA | TCGA-V5-A7RB-01A | TCGA-V5-A7RB | NFE2L3|NPY | NFE2L3 | NPY | 7 | 7 | 1 | 1 | 3 | 79 | 70 | 1.1 | 26192688 | 24324860 | tier1 | In-frame | 11462 | NA | 0.36894 |
| PRAD | TCGA-HC-7752-01A | TCGA-HC-7752 | MYBPC1|NPY | MYBPC1 | NPY | 12 | 7 | 1 | 1 | 2 | 3 | 3 | 100 | 102025497 | 24323807 | tier4 | CDS-5UTR | 10877 | NA | 0.37125 |
| SARC | TCGA-IE-A3OV-01A | TCGA-IE-A3OV | SMG6|RECK | SMG6 | RECK | 17 | 9 | -1 | 1 | 4 | 1 | 1 | 1.1 | 2139786 | 36107973 | tier2 | In-frame | 16422 | NA | 0 |
| BRCA | TCGA-E9-A3QA-01A | TCGA-E9-A3QA | NFX1|SPINK4 | NFX1 | SPINK4 | 9 | 9 | 1 | 1 | 7 | 4 | 4 | 0.3 | 33319125 | 33218363 | tier1 | CDS-5UTR | 11523 | NA | 0.36475 |
| LIHC | TCGA-DD-A73D-01A | TCGA-DD-A73D | ITPK1|SPINK4 | ITPK1 | SPINK4 | 14 | 9 | -1 | 1 | 6 | 12 | 10 | 100 | 93581414 | 33218363 | tier1 | CDS-5UTR | 8438 | NA | 0.35696 |
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