Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
| Showing page 394 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-E9-A3Q9-01A | TCGA-E9-A3Q9 | NAA15|SLC10A7 | NAA15 | SLC10A7 | 4 | 4 | 1 | -1 | 9 | 7 | 6 | 2.9 | 140291558 | 147179989 | tier1 | Out-of-frame | 11037 | NA | 0.32418 |
| SARC | TCGA-JV-A75J-01A | TCGA-JV-A75J | AKNA|ENOX1 | AKNA | ENOX1 | 9 | 13 | -1 | -1 | 2 | 13 | 11 | 0.005 | 117150140 | 44241680 | tier2 | 5UTR-5UTR | 754 | NA | 0.36605 |
| SARC | TCGA-KD-A5QU-01A | TCGA-KD-A5QU | DACH1|TNFSF11 | DACH1 | TNFSF11 | 13 | 13 | -1 | 1 | 9 | 2 | 1 | 0.12 | 72204688 | 43180633 | tier2 | In-frame | 4536 | NA | 0.37782 |
| BRCA | TCGA-AC-A3OD-01A | TCGA-AC-A3OD | KIAA0825|HSPH1 | KIAA0825 | HSPH1 | 5 | 13 | -1 | -1 | 2 | 4 | 4 | 0.19 | 93855953 | 31714446 | tier2 | Out-of-frame | 8803 | NA | 0.37309 |
| BLCA | TCGA-E7-A7DV-01A | TCGA-E7-A7DV | RARRES3|TGFBI | RARRES3 | TGFBI | 11 | 5 | 1 | 1 | 3 | 99 | 1 | 0.093 | 63313929 | 135396523 | tier4 | 3UTR-CDS | 14345 | NA | 0 |
| PRAD | TCGA-EJ-5515-01A | TCGA-EJ-5515 | MATR3|KDM3B | MATR3 | KDM3B | 5 | 5 | 1 | 1 | 26 | 15 | 14 | 1.3 | 138614097 | 137726702 | tier1 | 5UTR-CDS | 10035 | NA | 0.36403 |
| SARC | TCGA-DX-A3M1-01A | TCGA-DX-A3M1 | HMGA2|NR2C1 | HMGA2 | NR2C1 | 12 | 12 | 1 | -1 | 6 | 42 | 42 | 0.2 | 66232349 | 95461167 | tier2 | CDS-5UTR | 7862 | validated | 0.37513 |
| PRAD | TCGA-HC-7818-01A | TCGA-HC-7818 | DCAF5|PTK2B | DCAF5 | PTK2B | 14 | 8 | -1 | 1 | 5 | 2 | 2 | 1 | 69619482 | 27169821 | tier1 | CDS-5UTR | 4574 | NA | 0.38323 |
| OV | TCGA-23-1027-01A | TCGA-23-1027 | ESCO2|EPHX2 | ESCO2 | EPHX2 | 8 | 8 | 1 | 1 | 2 | 3 | 3 | 0.44 | 27646495 | 27394301 | tier2 | In-frame | 5802 | NA | 0.34849 |
| UCS | TCGA-ND-A4WF-01A | TCGA-ND-A4WF | SPOP|EPHX2 | SPOP | EPHX2 | 17 | 8 | -1 | 1 | 9 | 13 | 12 | 0.099 | 47755295 | 27358443 | tier1 | 5UTR-CDS | 16755 | NA | 0 |
| BRCA | TCGA-BH-A0C7-01B | TCGA-BH-A0C7 | STARD13|TNFRSF8 | STARD13 | TNFRSF8 | 13 | 1 | -1 | 1 | 6 | 3 | 3 | 0.063 | 33859607 | 12169623 | tier1 | In-frame | 17001 | NA | 0 |
| LUAD | TCGA-MP-A4SW-01A | TCGA-MP-A4SW | PLEKHG5|TNFRSF8 | PLEKHG5 | TNFRSF8 | 1 | 1 | -1 | 1 | 7 | 5 | 3 | 0.2 | 6556553 | 12198286 | tier1 | In-frame | 13026 | NA | 0.37253 |
| PRAD | TCGA-KK-A5A1-01A | TCGA-KK-A5A1 | VPS13D|TNFRSF8 | VPS13D | TNFRSF8 | 1 | 1 | 1 | 1 | 6 | 2 | 2 | 0.18 | 12516186 | 12157158 | tier1 | In-frame | 19634 | NA | 0 |
| BRCA | TCGA-AN-A0XV-01A | TCGA-AN-A0XV | TPD52|COPS5 | TPD52 | COPS5 | 8 | 8 | -1 | -1 | 45 | 71 | 67 | 0.054 | 81083660 | 67971680 | tier1 | Out-of-frame | 18483 | NA | 0 |
| LUSC | TCGA-60-2695-01A | TCGA-60-2695 | MSI2|AKAP1 | MSI2 | AKAP1 | 17 | 17 | 1 | 1 | 5 | 3 | 3 | 0.3 | 55607085 | 55182802 | tier1 | CDS-5UTR | 10709 | non-validated | 0.36294 |
| BRCA | TCGA-EW-A1J1-01A | TCGA-EW-A1J1 | ARHGAP23|TEX14 | ARHGAP23 | TEX14 | 17 | 17 | 1 | -1 | 6 | 4 | 4 | 0.32 | 36642381 | 56707915 | tier1 | In-frame | 1235 | NA | 0.35608 |
| BRCA | TCGA-A7-A2KD-01A | TCGA-A7-A2KD | KIAA0100|TEX14 | KIAA0100 | TEX14 | 17 | 17 | -1 | -1 | 13 | 4 | 4 | 1.3 | 26965270 | 56692706 | tier1 | Out-of-frame | 8728 | NA | 0.34547 |
| SARC | TCGA-FX-A2QS-01A | TCGA-FX-A2QS | ZNF383|TEX14 | ZNF383 | TEX14 | 19 | 17 | 1 | -1 | 6 | 2 | 2 | 3.6 | 37726976 | 56729363 | tier1 | CDS-5UTR | 20477 | non-validated | 0 |
| BRCA | TCGA-LL-A7SZ-01A | TCGA-LL-A7SZ | BIRC6|ABCC11 | BIRC6 | ABCC11 | 2 | 16 | 1 | -1 | 5 | 6 | 6 | 2.7 | 32738221 | 48211024 | tier1 | Out-of-frame | 2106 | NA | 0.36907 |
| BRCA | TCGA-BH-A0C3-01A | TCGA-BH-A0C3 | SKAP1|ABCC11 | SKAP1 | ABCC11 | 17 | 16 | -1 | -1 | 28 | 15 | 15 | 3.3 | 46423267 | 48211024 | tier1 | Out-of-frame | 15966 | NA | 0 |
|
Showing page 394 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.