Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-AN-A0AM-01A | TCGA-AN-A0AM | UTRN|SGK1 | UTRN | SGK1 | 6 | 6 | 1 | -1 | 4 | 1 | 1 | 0.4 | 144999714 | 134528569 | tier2 | Out-of-frame | 19466 | NA | 0 |
| ACC | TCGA-OR-A5KT-01A | TCGA-OR-A5KT | WIBG|SLC16A7 | WIBG | SLC16A7 | 12 | 12 | -1 | 1 | 66 | 36 | 35 | 0.2 | 56297171 | 60173204 | tier2 | Out-of-frame | 19861 | NA | 0 |
| SARC | TCGA-DX-A1L0-01A | TCGA-DX-A1L0 | TBC1D15|SLC16A7 | TBC1D15 | SLC16A7 | 12 | 12 | 1 | 1 | 44 | 28 | 26 | 0.077 | 72266783 | 60165000 | tier1 | Out-of-frame | 17457 | non-validated | 0 |
| LUSC | TCGA-NC-A5HQ-01A | TCGA-NC-A5HQ | RP11-762I7.5|VAMP8 | RP11-762I7.5 | VAMP8 | 12 | 2 | -1 | 1 | 42 | 20 | 18 | 0.015 | 56182859 | 85806132 | tier4 | NA | 14949 | NA | 0 |
| BRCA | TCGA-A1-A0SJ-01A | TCGA-A1-A0SJ | ADNP|GHRH | ADNP | GHRH | 20 | 20 | -1 | -1 | 20 | 16 | 16 | 0.12 | 49547363 | 35885311 | tier2 | 5UTR-5UTR | 526 | NA | 0.35404 |
| BRCA | TCGA-A8-A079-01A | TCGA-A8-A079 | EPB41L1|GHRH | EPB41L1 | GHRH | 20 | 20 | 1 | -1 | 281 | 351 | 302 | 0.004 | 34700402 | 35885311 | tier1 | 5UTR-5UTR | 5640 | NA | 0.36643 |
| BRCA | TCGA-AR-A24Q-01A | TCGA-AR-A24Q | GNAI3|CASQ2 | GNAI3 | CASQ2 | 1 | 1 | 1 | -1 | 11 | 6 | 6 | 0.3 | 110091460 | 116287533 | tier1 | Out-of-frame | 7172 | NA | 0.37347 |
| BRCA | TCGA-BH-A0W3-01A | TCGA-BH-A0W3 | LRP5|CASQ2 | LRP5 | CASQ2 | 11 | 1 | 1 | -1 | 11 | 4 | 4 | 0.14 | 68125315 | 116287533 | tier1 | Out-of-frame | 9529 | NA | 0.37292 |
| BRCA | TCGA-E9-A243-01A | TCGA-E9-A243 | TSPAN5|PKD2 | TSPAN5 | PKD2 | 4 | 4 | -1 | 1 | 5 | 1 | 1 | 0.05 | 99579297 | 88973143 | tier4 | In-frame | 18803 | NA | 0 |
| LIHC | TCGA-LG-A9QC-01A | TCGA-LG-A9QC | RBFOX2|FAM86A | RBFOX2 | FAM86A | 22 | 16 | -1 | -1 | 8 | 6 | 6 | 0.59 | 36424288 | 5135733 | tier1 | Out-of-frame | 14425 | NA | 0 |
| LIHC | TCGA-LG-A9QC-01A | TCGA-LG-A9QC | ZDHHC24|FAM86A | ZDHHC24 | FAM86A | 11 | 16 | -1 | -1 | 2 | 4 | 3 | 0.57 | 66311175 | 5135733 | tier2 | In-frame | 20223 | NA | 0 |
| BRCA | TCGA-LL-A8F5-01A | TCGA-LL-A8F5 | LMO7|UCHL3 | LMO7 | UCHL3 | 13 | 13 | 1 | 1 | 6 | 9 | 8 | 1 | 76210862 | 76140831 | tier1 | NA | 9407 | NA | 0.36907 |
| LUAD | TCGA-69-7979-01A | TCGA-69-7979 | FARP1|UCHL3 | FARP1 | UCHL3 | 13 | 13 | 1 | 1 | 13 | 20 | 19 | 0.64 | 98795746 | 76134889 | tier1 | 5UTR-CDS | 6245 | NA | 0.35606 |
| SARC | TCGA-SI-AA8C-01A | TCGA-SI-AA8C | KLF12|UCHL3 | KLF12 | UCHL3 | 13 | 13 | -1 | 1 | 3 | 2 | 1 | 1.4 | 74518118 | 76134889 | tier3 | In-frame | 9040 | NA | 0.36782 |
| SKCM | TCGA-Z2-A8RT-06A | TCGA-Z2-A8RT | CLINT1|UCHL3 | CLINT1 | UCHL3 | 5 | 13 | -1 | 1 | 22 | 20 | 17 | 0.51 | 157285938 | 76134889 | tier1 | Out-of-frame | 3795 | NA | 0.35848 |
| LUSC | TCGA-22-1017-01A | TCGA-22-1017 | GCN1L1|CCND2 | GCN1L1 | CCND2 | 12 | 12 | -1 | 1 | 10 | 8 | 8 | 0.16 | 120600651 | 4398008 | tier1 | Out-of-frame | 7011 | NA | 0.36965 |
| SARC | TCGA-K1-A6RU-01A | TCGA-K1-A6RU | KIF27|TRPM6 | KIF27 | TRPM6 | 9 | 9 | -1 | -1 | 2 | 5 | 4 | 0.12 | 86495212 | 77347652 | tier2 | Out-of-frame | 8998 | NA | 0.36647 |
| BLCA | TCGA-G2-AA3F-01A | TCGA-G2-AA3F | UXS1|C2orf40 | UXS1 | C2orf40 | 2 | 2 | -1 | 1 | 45 | 20 | 20 | 0.72 | 106746130 | 106688300 | tier1 | In-frame | 19492 | NA | 0 |
| SKCM | TCGA-ER-A19E-06A | TCGA-ER-A19E | FAM102A|PHF19 | FAM102A | PHF19 | 9 | 9 | -1 | -1 | 9 | 5 | 5 | 0.18 | 130710350 | 123631608 | tier1 | Out-of-frame | 5992 | non-validated | 0.34891 |
| LUAD | TCGA-MP-A4T6-01A | TCGA-MP-A4T6 | PPP2R4|NEK6 | PPP2R4 | NEK6 | 9 | 9 | 1 | 1 | 4 | 2 | 2 | 0.03 | 131904831 | 127074788 | tier1 | In-frame | 13404 | NA | 0.37801 |
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