Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| STAD | TCGA-CD-8532-01A | TCGA-CD-8532 | RAP1A|ABCD3 | RAP1A | ABCD3 | 1 | 1 | 1 | 1 | 2 | 19 | 13 | 0.18 | 112162556 | 94924163 | tier2 | 5UTR-CDS | 14266 | NA | 0 |
| BRCA | TCGA-A7-A0CG-01A | TCGA-A7-A0CG | PRRC2C|FASLG | PRRC2C | FASLG | 1 | 1 | 1 | 1 | 7 | 4 | 4 | 0.7 | 171454874 | 172634762 | tier1 | 5UTR-CDS | 13651 | NA | 0.364 |
| SARC | TCGA-DX-A2J0-01A | TCGA-DX-A2J0 | MPZL1|TNFSF4 | MPZL1 | TNFSF4 | 1 | 1 | 1 | -1 | 84 | 52 | 41 | 2.2 | 167745403 | 173157708 | tier1 | In-frame | 10636 | validated | 0.36968 |
| SKCM | TCGA-BF-AAP1-01A | TCGA-BF-AAP1 | SYT14|HSD11B1 | SYT14 | HSD11B1 | 1 | 1 | 1 | 1 | 4 | 2 | 2 | 0.91 | 210126101 | 209905781 | tier1 | In-frame | 17275 | NA | 0 |
| PRAD | TCGA-HC-A8CY-01A | TCGA-HC-A8CY | FNIP2|SLC35A3 | FNIP2 | SLC35A3 | 4 | 1 | 1 | 1 | 2 | 6 | 6 | 0.39 | 159817017 | 100459093 | tier3 | CDS-5UTR | 6631 | NA | 0.33342 |
| BRCA | TCGA-A8-A09Q-01A | TCGA-A8-A09Q | NVL|NEK2 | NVL | NEK2 | 1 | 1 | -1 | -1 | 32 | 42 | 42 | 0.82 | 224437914 | 211847855 | tier1 | In-frame | 11964 | NA | 0.37511 |
| BRCA | TCGA-OL-A5RZ-01A | TCGA-OL-A5RZ | FGGY|RPS6KA1 | FGGY | RPS6KA1 | 1 | 1 | 1 | 1 | 3 | 1 | 1 | 0.81 | 59978111 | 26863416 | tier2 | Out-of-frame | 6517 | NA | 0.38449 |
| STAD | TCGA-HU-A4GH-01A | TCGA-HU-A4GH | ARID1A|RPS6KA1 | ARID1A | RPS6KA1 | 1 | 1 | 1 | 1 | 3 | 117 | 108 | 0.08 | 27102198 | 26897940 | tier1 | In-frame | 1343 | NA | 0.38807 |
| ESCA | TCGA-2H-A9GI-01A | TCGA-2H-A9GI | TOLLIP|MUC5B | TOLLIP | MUC5B | 11 | 11 | -1 | 1 | 2 | 12 | 11 | 0.19 | 1307232 | 1273573 | tier2 | In-frame | 18426 | NA | 0 |
| HNSC | TCGA-CN-A642-01A | TCGA-CN-A642 | MOBKL2A|STK11 | MOBKL2A | STK11 | 19 | 19 | -1 | 1 | 27 | 8 | 8 | 0.11 | 2076810 | 1218416 | tier1 | Out-of-frame | 10565 | NA | 0.38237 |
| LUAD | TCGA-99-8033-01A | TCGA-99-8033 | TNRC6B|STK11 | TNRC6B | STK11 | 22 | 19 | 1 | 1 | 8 | 5 | 4 | 7.5 | 40697337 | 1222984 | tier1 | Out-of-frame | 18397 | NA | 0 |
| UCEC | TCGA-B5-A3S1-01A | TCGA-B5-A3S1 | NDUFS7|STK11 | NDUFS7 | STK11 | 19 | 19 | 1 | 1 | 9 | 9 | 7 | 0.45 | 1388592 | 1222984 | tier1 | In-frame | 11311 | NA | 0.38333 |
| LAML | TCGA-AB-2893-03A | TCGA-AB-2893 | MLLT4|MLL | MLLT4 | MLL | 6 | 11 | 1 | 1 | 11 | 2 | 2 | 0.38 | 168227917 | 118352430 | tier1 | Out-of-frame | 10525 | NA | 0.39579 |
| PRAD | TCGA-EJ-5518-01A | TCGA-EJ-5518 | HNRNPUL1|SLC8A2 | HNRNPUL1 | SLC8A2 | 19 | 19 | 1 | -1 | 65 | 76 | 63 | 2.7 | 41787180 | 47960851 | tier1 | In-frame | 7913 | NA | 0.37059 |
| SARC | TCGA-DX-A3U6-01A | TCGA-DX-A3U6 | ROBO2|TNNT2 | ROBO2 | TNNT2 | 3 | 1 | 1 | -1 | 4 | 1 | 1 | 0.12 | 77089997 | 201328791 | tier2 | Out-of-frame | 14873 | validated | 0 |
| BRCA | TCGA-A7-A13D-01A | TCGA-A7-A13D | RPRD2|CA14 | RPRD2 | CA14 | 1 | 1 | 1 | 1 | 3 | 4 | 4 | 0.48 | 150416853 | 150232546 | tier1 | In-frame | 15027 | non-validated | 0 |
| LIHC | TCGA-G3-A6UC-01A | TCGA-G3-A6UC | RPRD2|CA14 | RPRD2 | CA14 | 1 | 1 | 1 | 1 | 49 | 57 | 48 | 0.48 | 150337395 | 150236993 | tier1 | Out-of-frame | 15028 | NA | 0 |
| LUAD | TCGA-55-7227-01A | TCGA-55-7227 | RPRD2|CA14 | RPRD2 | CA14 | 1 | 1 | 1 | 1 | 2 | 4 | 4 | 0.48 | 150337395 | 150232546 | tier3 | In-frame | 15026 | NA | 0 |
| HNSC | TCGA-CV-7248-01A | TCGA-CV-7248 | SACS|PHF3 | SACS | PHF3 | 13 | 6 | -1 | 1 | 4 | 5 | 5 | 0.11 | 23932474 | 64487959 | tier1 | NA | 15261 | NA | 0 |
| SARC | TCGA-FX-A2QS-01A | TCGA-FX-A2QS | UBXN2B|PHF3 | UBXN2B | PHF3 | 8 | 6 | 1 | 1 | 5 | 1 | 1 | 0.43 | 59352329 | 64389901 | tier2 | Out-of-frame | 19171 | non-validated | 0 |
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