Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SKCM | TCGA-EE-A2MS-06A | TCGA-EE-A2MS | LYST|NID1 | LYST | NID1 | 1 | 1 | -1 | -1 | 64 | 30 | 26 | 0.81 | 235950500 | 236212289 | tier1 | Out-of-frame | 9712 | NA | 0.37616 |
| LIHC | TCGA-BC-A8YO-01A | TCGA-BC-A8YO | ARHGAP42|KMO | ARHGAP42 | KMO | 11 | 1 | 1 | 1 | 8 | 29 | 24 | 0.89 | 100730356 | 241749981 | tier1 | In-frame | 1254 | NA | 0.32849 |
| PRAD | TCGA-VP-A87D-01A | TCGA-VP-A87D | NME7|KMO | NME7 | KMO | 1 | 1 | -1 | 1 | 2 | 1 | 1 | 0.31 | 169199956 | 241749981 | tier3 | In-frame | 11616 | NA | 0.3596 |
| LUSC | TCGA-LA-A7SW-01A | TCGA-LA-A7SW | KIF26B|AKT3 | KIF26B | AKT3 | 1 | 1 | 1 | -1 | 2 | 3 | 3 | 0.11 | 245318789 | 243828185 | tier2 | Out-of-frame | 8984 | NA | 0.38128 |
| SKCM | TCGA-FS-A1ZD-06A | TCGA-FS-A1ZD | CEP170|AKT3 | CEP170 | AKT3 | 1 | 1 | -1 | -1 | 4 | 38 | 35 | 0.36 | 243349081 | 243736350 | tier1 | In-frame | 3539 | validated | 0.38187 |
| SKCM | TCGA-ER-A197-06A | TCGA-ER-A197 | ZEB2|AKT3 | ZEB2 | AKT3 | 2 | 1 | -1 | -1 | 23 | 21 | 20 | 0.14 | 145182363 | 243708899 | tier1 | Out-of-frame | 20235 | NA | 0 |
| BRCA | TCGA-A2-A0T7-01A | TCGA-A2-A0T7 | PARD6B|CD48 | PARD6B | CD48 | 20 | 1 | 1 | -1 | 2 | 1 | 1 | 0.084 | 49354616 | 160654979 | tier3 | In-frame | 12286 | NA | 0.37194 |
| SARC | TCGA-DX-A1L2-01A | TCGA-DX-A1L2 | ARHGEF11|CD48 | ARHGEF11 | CD48 | 1 | 1 | -1 | -1 | 49 | 32 | 26 | 0.44 | 157014091 | 160654979 | tier1 | Out-of-frame | 1289 | non-validated | 0.37721 |
| SKCM | TCGA-FR-A3YN-06A | TCGA-FR-A3YN | KIRREL|CD48 | KIRREL | CD48 | 1 | 1 | 1 | -1 | 7 | 2 | 2 | 0.003 | 157963518 | 160654979 | tier1 | In-frame | 9023 | NA | 0.37412 |
| LGG | TCGA-CS-5395-01A | TCGA-CS-5395 | LIN9|KDM5B | LIN9 | KDM5B | 1 | 1 | -1 | -1 | 11 | 14 | 13 | 0.27 | 226465476 | 202746222 | tier1 | Out-of-frame | 9362 | non-validated | 0.35204 |
| PCPG | TCGA-TT-A6YJ-01A | TCGA-TT-A6YJ | SYT2|KDM5B | SYT2 | KDM5B | 1 | 1 | -1 | -1 | 22 | 15 | 13 | 2 | 202679386 | 202701067 | tier1 | 5UTR-CDS | 17276 | NA | 0 |
| LGG | TCGA-E1-5304-01A | TCGA-E1-5304 | EIF4G3|ECE1 | EIF4G3 | ECE1 | 1 | 1 | -1 | -1 | 2 | 2 | 2 | 0.093 | 21377359 | 21616649 | tier3 | 5UTR-CDS | 5475 | NA | 0.36349 |
| LUAD | TCGA-91-8499-01A | TCGA-91-8499 | EIF4G3|ECE1 | EIF4G3 | ECE1 | 1 | 1 | -1 | -1 | 32 | 23 | 20 | 0.093 | 21415631 | 21573856 | tier1 | In-frame | 5474 | NA | 0.36349 |
| LUSC | TCGA-85-8580-01A | TCGA-85-8580 | EIF4G3|ECE1 | EIF4G3 | ECE1 | 1 | 1 | -1 | -1 | 13 | 7 | 7 | 0.093 | 21377359 | 21586885 | tier1 | 5UTR-CDS | 5473 | NA | 0.36349 |
| UCS | TCGA-NA-A4R1-01A | TCGA-NA-A4R1 | EIF4G3|ECE1 | EIF4G3 | ECE1 | 1 | 1 | -1 | -1 | 52 | 41 | 33 | 0.093 | 21377359 | 21616649 | tier1 | 5UTR-CDS | 5476 | NA | 0.36349 |
| SARC | TCGA-DX-A8BS-01A | TCGA-DX-A8BS | OSBPL3|SLC2A1 | OSBPL3 | SLC2A1 | 7 | 1 | -1 | -1 | 4 | 1 | 1 | 8.4 | 25019505 | 43408992 | tier3 | 5UTR-CDS | 12081 | NA | 0.3765 |
| PRAD | TCGA-2A-A8VL-01A | TCGA-2A-A8VL | NASP|PIK3R3 | NASP | PIK3R3 | 1 | 1 | 1 | -1 | 2 | 2 | 2 | 0.64 | 46049877 | 46512297 | tier2 | In-frame | 11101 | NA | 0.37904 |
| TGCT | TCGA-XY-A8S2-01A | TCGA-XY-A8S2 | SPATA6|PIK3R3 | SPATA6 | PIK3R3 | 1 | 1 | -1 | -1 | 2 | 2 | 2 | 100 | 48917224 | 46543285 | tier3 | Out-of-frame | 16680 | NA | 0 |
| LUSC | TCGA-85-A4JC-01A | TCGA-85-A4JC | NUFIP1|FAAH | NUFIP1 | FAAH | 13 | 1 | -1 | 1 | 13 | 21 | 17 | 0.26 | 45533516 | 46879119 | tier1 | Out-of-frame | 11874 | NA | 0.36231 |
| SKCM | TCGA-EB-A551-01A | TCGA-EB-A551 | PRPF38A|ABCD3 | PRPF38A | ABCD3 | 1 | 1 | 1 | 1 | 2 | 3 | 2 | 0.028 | 52871511 | 94924163 | tier2 | In-frame | 13600 | NA | 0.36169 |
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