Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-97-A4M3-01A | TCGA-97-A4M3 | GATAD2B|ASH1L | GATAD2B | ASH1L | 1 | 1 | -1 | -1 | 4 | 1 | 1 | 0.26 | 153895209 | 155349907 | tier2 | 5UTR-CDS | 6978 | NA | 0.37119 |
| LUAD | TCGA-55-7903-01A | TCGA-55-7903 | SHC1|ASH1L | SHC1 | ASH1L | 1 | 1 | -1 | -1 | 27 | 9 | 6 | 1.5 | 154946724 | 155309159 | tier1 | 5UTR-CDS | 15877 | NA | 0 |
| LUSC | TCGA-33-4587-01A | TCGA-33-4587 | CDKAL1|ASH1L | CDKAL1 | ASH1L | 6 | 1 | 1 | -1 | 14 | 19 | 14 | 0.4 | 20846409 | 155349907 | tier1 | In-frame | 3445 | NA | 0.36064 |
| PRAD | TCGA-EJ-5518-01A | TCGA-EJ-5518 | NME7|ASH1L | NME7 | ASH1L | 1 | 1 | -1 | -1 | 4 | 3 | 3 | 0.057 | 169292355 | 155491409 | tier1 | CDS-5UTR | 11614 | NA | 0.37008 |
| UCS | TCGA-N8-A4PL-01A | TCGA-N8-A4PL | KIF3C|SRM | KIF3C | SRM | 2 | 1 | -1 | -1 | 26 | 8 | 7 | 2.9 | 26203242 | 11119402 | tier1 | Out-of-frame | 9007 | NA | 0.35776 |
| SKCM | TCGA-GF-A2C7-01A | TCGA-GF-A2C7 | MIER1|LEPR | MIER1 | LEPR | 1 | 1 | 1 | 1 | 5 | 3 | 1 | 0.039 | 67405735 | 66036156 | tier4 | In-frame | 10364 | NA | 0.3752 |
| BRCA | TCGA-A2-A1FW-01A | TCGA-A2-A1FW | ACBD6|IVNS1ABP | ACBD6 | IVNS1ABP | 1 | 1 | -1 | -1 | 19 | 14 | 14 | 3 | 180366651 | 185274775 | tier1 | In-frame | 255 | NA | 0.37229 |
| LUSC | TCGA-63-A5MH-01A | TCGA-63-A5MH | PEX14|PRG4 | PEX14 | PRG4 | 1 | 1 | 1 | 1 | 24 | 12 | 11 | 0.029 | 10555378 | 186281901 | tier1 | Out-of-frame | 12630 | NA | 0.36076 |
| SKCM | TCGA-EB-A4OY-01A | TCGA-EB-A4OY | GALNTL4|PRDM2 | GALNTL4 | PRDM2 | 11 | 1 | -1 | 1 | 55 | 45 | 42 | 0.71 | 11642906 | 14142922 | tier1 | Out-of-frame | 6941 | NA | 0.36939 |
| BRCA | TCGA-AR-A0TP-01A | TCGA-AR-A0TP | DENND2C|AMPD1 | DENND2C | AMPD1 | 1 | 1 | -1 | -1 | 4 | 1 | 1 | 1.8 | 115212604 | 115218624 | tier3 | 5UTR-CDS | 4709 | NA | 0.34881 |
| LUSC | TCGA-39-5019-01A | TCGA-39-5019 | TFIP11|AMPD1 | TFIP11 | AMPD1 | 22 | 1 | -1 | -1 | 22 | 10 | 8 | 1.1 | 26908065 | 115231362 | tier4 | 5UTR-CDS | 17724 | NA | 0 |
| BLCA | TCGA-CU-A5W6-01A | TCGA-CU-A5W6 | ENAH|UCHL5 | ENAH | UCHL5 | 1 | 1 | -1 | -1 | 5 | 11 | 10 | 0.14 | 225840388 | 193020947 | tier1 | Out-of-frame | 5578 | NA | 0.35956 |
| SKCM | TCGA-EB-A551-01A | TCGA-EB-A551 | SPATA6|CRYZ | SPATA6 | CRYZ | 1 | 1 | -1 | -1 | 3 | 1 | 1 | 0.41 | 48937630 | 75190518 | tier2 | CDS-5UTR | 16678 | NA | 0 |
| HNSC | TCGA-HD-7831-01A | TCGA-HD-7831 | RAP1A|CD2 | RAP1A | CD2 | 1 | 1 | 1 | 1 | 6 | 6 | 5 | 1 | 112162556 | 117297253 | tier1 | 5UTR-CDS | 14268 | NA | 0 |
| UCEC | TCGA-AX-A3G4-01A | TCGA-AX-A3G4 | KIAA1797|CD2 | KIAA1797 | CD2 | 9 | 1 | 1 | 1 | 26 | 14 | 12 | 1.2 | 20823114 | 117303024 | tier1 | Out-of-frame | 8905 | NA | 0.36661 |
| LUSC | TCGA-NK-A5D1-01A | TCGA-NK-A5D1 | NUP85|NR5A2 | NUP85 | NR5A2 | 17 | 1 | 1 | 1 | 6 | 1 | 1 | 5.1 | 73201889 | 200080330 | tier3 | In-frame | 11945 | NA | 0.37549 |
| BRCA | TCGA-BH-A0B2-01A | TCGA-BH-A0B2 | KLRAQ1|WARS2 | KLRAQ1 | WARS2 | 2 | 1 | 1 | -1 | 4 | 2 | 2 | 0.31 | 48725874 | 119619230 | tier1 | In-frame | 9089 | NA | 0.34369 |
| HNSC | TCGA-CV-6937-01A | TCGA-CV-6937 | C11orf41|WARS2 | C11orf41 | WARS2 | 11 | 1 | 1 | -1 | 7 | 7 | 5 | 4.1 | 33596419 | 119619230 | tier1 | Out-of-frame | 2383 | NA | 0 |
| LIHC | TCGA-XR-A8TG-01A | TCGA-XR-A8TG | C17orf63|HAO2 | C17orf63 | HAO2 | 17 | 1 | -1 | 1 | 20 | 6 | 6 | 0.87 | 27139227 | 119934733 | tier1 | 5UTR-CDS | 2515 | NA | 0 |
| LUAD | TCGA-55-7576-01A | TCGA-55-7576 | LYST|NID1 | LYST | NID1 | 1 | 1 | -1 | -1 | 5 | 2 | 1 | 0.81 | 235933460 | 236148805 | tier3 | In-frame | 9711 | NA | 0.37616 |
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