Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-AN-A0AJ-01A | TCGA-AN-A0AJ | ZDHHC5|LCT | ZDHHC5 | LCT | 11 | 2 | 1 | -1 | 51 | 34 | 31 | 0.002 | 57440666 | 136555708 | tier1 | Out-of-frame | 20225 | NA | 0 |
| BRCA | TCGA-AC-A6IW-01A | TCGA-AC-A6IW | LAPTM4A|SDC1 | LAPTM4A | SDC1 | 2 | 2 | -1 | -1 | 136 | 160 | 141 | 0.72 | 20251171 | 20405185 | tier1 | In-frame | 9224 | NA | 0.36906 |
| BRCA | TCGA-BH-A5J0-01A | TCGA-BH-A5J0 | RAB10|SDC1 | RAB10 | SDC1 | 2 | 2 | 1 | -1 | 10 | 4 | 4 | 1.4 | 26350820 | 20405185 | tier1 | In-frame | 14036 | NA | 0 |
| LUAD | TCGA-38-4630-01A | TCGA-38-4630 | ARHGAP15|KYNU | ARHGAP15 | KYNU | 2 | 2 | 1 | 1 | 4 | 7 | 7 | 0.19 | 144008169 | 143742653 | tier1 | In-frame | 1216 | non-validated | 0.37268 |
| LUSC | TCGA-NC-A5HJ-01A | TCGA-NC-A5HJ | ARHGAP15|KYNU | ARHGAP15 | KYNU | 2 | 2 | 1 | 1 | 7 | 13 | 13 | 0.19 | 143887035 | 143642918 | tier1 | 5UTR-5UTR | 1217 | NA | 0.37268 |
| PRAD | TCGA-YL-A8S8-01A | TCGA-YL-A8S8 | FAM171B|KYNU | FAM171B | KYNU | 2 | 2 | 1 | 1 | 22 | 13 | 12 | 0.11 | 187559138 | 143642918 | tier1 | CDS-5UTR | 6098 | NA | 0.33982 |
| SARC | TCGA-N1-A6IA-01A | TCGA-N1-A6IA | SMEK2|KYNU | SMEK2 | KYNU | 2 | 2 | -1 | 1 | 2 | 4 | 3 | 0.34 | 55842587 | 143642918 | tier3 | CDS-5UTR | 16412 | non-validated | 0 |
| CESC | TCGA-VS-A8EC-01A | TCGA-VS-A8EC | HMHA1|GRIN3B | HMHA1 | GRIN3B | 19 | 19 | 1 | 1 | 2 | 1 | 1 | 0.14 | 1067494 | 1007627 | tier2 | In-frame | 7876 | NA | 0.36022 |
| HNSC | TCGA-T2-A6X0-01A | TCGA-T2-A6X0 | UFSP2|EPHA4 | UFSP2 | EPHA4 | 4 | 2 | -1 | -1 | 3 | 4 | 4 | 1.3 | 186347020 | 222365892 | tier1 | Out-of-frame | 19189 | NA | 0 |
| CESC | TCGA-C5-A3HF-01A | TCGA-C5-A3HF | SPEN|DNAJC16 | SPEN | DNAJC16 | 1 | 1 | 1 | 1 | 10 | 17 | 17 | 0.22 | 16174645 | 15886021 | tier1 | Out-of-frame | 16710 | NA | 0 |
| LUSC | TCGA-34-A5IX-01A | TCGA-34-A5IX | STX6|TNR | STX6 | TNR | 1 | 1 | -1 | -1 | 4 | 5 | 4 | 0.27 | 180971742 | 175375913 | tier1 | CDS-5UTR | 17140 | NA | 0 |
| SARC | TCGA-SG-A6Z7-01A | TCGA-SG-A6Z7 | POC1B|TNR | POC1B | TNR | 12 | 1 | -1 | -1 | 6 | 2 | 2 | 0.048 | 89885713 | 175375913 | tier1 | CDS-5UTR | 13130 | NA | 0.36717 |
| SARC | TCGA-DX-A1L0-01A | TCGA-DX-A1L0 | XPR1|TNR | XPR1 | TNR | 1 | 1 | 1 | -1 | 4 | 5 | 3 | 1.6 | 180601406 | 175497505 | tier1 | CDS-5UTR | 19979 | non-validated | 0 |
| LIHC | TCGA-PD-A5DF-01A | TCGA-PD-A5DF | RAI14|SCP2 | RAI14 | SCP2 | 5 | 1 | 1 | 1 | 10 | 13 | 13 | 0.017 | 34656580 | 53440441 | tier1 | 5UTR-CDS | 14210 | validated | 0 |
| LIHC | TCGA-2Y-A9HA-01A | TCGA-2Y-A9HA | NCF2|PAPPA2 | NCF2 | PAPPA2 | 1 | 1 | -1 | 1 | 12 | 11 | 10 | 0.25 | 183538277 | 176640106 | tier1 | In-frame | 11154 | NA | 0.37627 |
| SARC | TCGA-SI-AA8B-01A | TCGA-SI-AA8B | C1orf21|ANGPTL1 | C1orf21 | ANGPTL1 | 1 | 1 | 1 | -1 | 6 | 9 | 9 | 1.2 | 184446737 | 178838358 | tier1 | CDS-5UTR | 2600 | NA | 0 |
| LIHC | TCGA-BC-A10R-01A | TCGA-BC-A10R | SRSF4|MECR | SRSF4 | MECR | 1 | 1 | -1 | -1 | 5 | 3 | 3 | 0.71 | 29481208 | 29543197 | tier1 | In-frame | 16893 | NA | 0 |
| STAD | TCGA-BR-8289-01A | TCGA-BR-8289 | SRSF4|MECR | SRSF4 | MECR | 1 | 1 | -1 | -1 | 12 | 94 | 83 | 0.71 | 29508158 | 29533417 | tier1 | Out-of-frame | 16894 | NA | 0 |
| LUSC | TCGA-60-2721-01A | TCGA-60-2721 | BSDC1|HDAC1 | BSDC1 | HDAC1 | 1 | 1 | -1 | 1 | 86 | 60 | 57 | 1.2 | 32834048 | 32797075 | tier1 | Out-of-frame | 2242 | NA | 0.37238 |
| UCS | TCGA-N9-A4Q1-01A | TCGA-N9-A4Q1 | VTI1A|HDAC1 | VTI1A | HDAC1 | 10 | 1 | 1 | 1 | 10 | 9 | 9 | 3.8 | 114298089 | 32790080 | tier1 | In-frame | 19694 | NA | 0 |
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