TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
COAD	TCGA-DM-A288-01A	TCGA-DM-A288	SMEK2\|EFEMP1	SMEK2	EFEMP1	2	2	-1	-1	5	5	2	0.013	55842587	56108869	tier1	Out-of-frame	16410	NA	0
KICH	TCGA-KN-8427-01A	TCGA-KN-8427	SH3GL1\|FN1	SH3GL1	FN1	19	2	-1	-1	3	1	1	0.22	4361313	216300790	tier4	3UTR-5UTR	15821	non-validated	0
PRAD	TCGA-HC-7231-01A	TCGA-HC-7231	SERINC2\|FN1	SERINC2	FN1	1	2	1	-1	2	2	1	0.68	31907521	216274837	tier3	3UTR-CDS	15631	NA	0
MESO	TCGA-TS-A7P8-01A	TCGA-TS-A7P8	ACOX3\|STAT1	ACOX3	STAT1	4	2	-1	-1	13	6	6	4.5	8442375	191863034	tier1	5UTR-CDS	298	NA	0.37869
SARC	TCGA-IE-A3OV-01A	TCGA-IE-A3OV	CCDC39\|PECR	CCDC39	PECR	3	2	-1	-1	3	1	1	0.29	180565295	216930200	tier2	NA	3138	NA	0.35255
PRAD	TCGA-V1-A9OY-01A	TCGA-V1-A9OY	GULP1\|KCNJ13	GULP1	KCNJ13	2	2	1	-1	4	2	2	0.002	189348219	233636088	tier1	CDS-5UTR	7563	NA	0.35316
PRAD	TCGA-HC-A76X-01A	TCGA-HC-A76X	KCMF1\|GGCX	KCMF1	GGCX	2	2	1	-1	4	4	4	1.4	85198590	85783383	tier1	Out-of-frame	8562	NA	0.35268
LUAD	TCGA-69-7978-01A	TCGA-69-7978	ATOH8\|GNLY	ATOH8	GNLY	2	2	1	1	4	6	6	0.073	85991305	85922443	tier1	Out-of-frame	1656	NA	0.34547
LUAD	TCGA-86-8673-01A	TCGA-86-8673	ATOH8\|GNLY	ATOH8	GNLY	2	2	1	1	5	8	7	0.073	85982080	85922443	tier1	Out-of-frame	1657	NA	0.34547
PRAD	TCGA-KC-A7FA-01A	TCGA-KC-A7FA	NPAS2\|GNLY	NPAS2	GNLY	2	2	1	1	6	8	7	1.5	101565942	85922443	tier1	In-frame	11679	NA	0.36679
LGG	TCGA-CS-6666-01A	TCGA-CS-6666	SEPT10\|PLCD4	SEPT10	PLCD4	2	2	-1	1	2	1	1	1.2	110371375	219480430	tier2	CDS-5UTR	15593	NA	0
HNSC	TCGA-CV-5443-01A	TCGA-CV-5443	CANX\|IL1R2	CANX	IL1R2	5	2	1	1	2	24	16	2.9	179157926	102638649	tier4	3UTR-CDS	2952	non-validated	0.36631
SARC	TCGA-K1-A6RV-01A	TCGA-K1-A6RV	GALNT13\|SMYD1	GALNT13	SMYD1	2	2	1	1	35	23	20	0.021	154997018	88383835	tier1	In-frame	6923	NA	0.35595
STAD	TCGA-VQ-A925-01A	TCGA-VQ-A925	TMEM182\|IL18R1	TMEM182	IL18R1	2	2	1	1	2	10	8	0.49	103380886	102979093	tier2	CDS-5UTR	17997	NA	0
LGG	TCGA-DU-6397-02A	TCGA-DU-6397	SMEK2\|IL18RAP	SMEK2	IL18RAP	2	2	-1	1	4	3	3	0.15	55785911	103053672	tier1	In-frame	16411	non-validated	0
BRCA	TCGA-A8-A07C-01A	TCGA-A8-A07C	TMEM182\|SLC9A2	TMEM182	SLC9A2	2	2	1	1	11	5	4	0.2	103380886	103274023	tier1	In-frame	17998	NA	0
UCEC	TCGA-FI-A3PX-01A	TCGA-FI-A3PX	MAFF\|STK16	MAFF	STK16	22	2	1	1	7	8	8	0.88	38598219	220110618	tier1	5UTR-5UTR	9760	NA	0.3741
UCEC	TCGA-KP-A3VZ-01A	TCGA-KP-A3VZ	FIGN\|STK25	FIGN	STK25	2	2	-1	-1	67	45	34	0.45	164591413	242441123	tier1	Out-of-frame	6540	NA	0.37164
THCA	TCGA-H2-A2K9-01A	TCGA-H2-A2K9	CNPY3\|TPO	CNPY3	TPO	6	2	1	1	2	15	10	0.33	42902336	1417252	tier4	CDS-5UTR	3942	NA	0.3387
HNSC	TCGA-UF-A71E-01A	TCGA-UF-A71E	EPC1\|QPCT	EPC1	QPCT	10	2	-1	1	6	14	13	0.87	32594700	37586723	tier1	Out-of-frame	5662	NA	0.35777

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