Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUSC | TCGA-56-7223-01A | TCGA-56-7223 | MCCC1|FXR1 | MCCC1 | FXR1 | 3 | 3 | -1 | 1 | 33 | 41 | 37 | 3.9 | 182788787 | 180679256 | tier1 | Out-of-frame | 10082 | NA | 0.36378 |
| OV | TCGA-09-2044-01B | TCGA-09-2044 | SPICE1|MORC1 | SPICE1 | MORC1 | 3 | 3 | -1 | -1 | 3 | 10 | 8 | 0.06 | 113207792 | 108690249 | tier2 | In-frame | 16725 | NA | 0 |
| BRCA | TCGA-B6-A0RT-01A | TCGA-B6-A0RT | RNF19A|SLC41A3 | RNF19A | SLC41A3 | 8 | 3 | -1 | -1 | 10 | 6 | 6 | 1.3 | 101348336 | 125731592 | tier1 | NA | 14807 | non-validated | 0 |
| SARC | TCGA-FX-A3NK-01A | TCGA-FX-A3NK | WASF1|SLC41A3 | WASF1 | SLC41A3 | 6 | 3 | -1 | -1 | 24 | 15 | 10 | 0.27 | 110434529 | 125731592 | tier2 | In-frame | 19718 | NA | 0 |
| BRCA | TCGA-A8-A06U-01A | TCGA-A8-A06U | TOPBP1|NEK11 | TOPBP1 | NEK11 | 3 | 3 | -1 | 1 | 60 | 75 | 65 | 1.9 | 133356720 | 131068401 | tier1 | Out-of-frame | 18453 | NA | 0 |
| LUSC | TCGA-37-A5EL-01A | TCGA-37-A5EL | SPC25|NEK11 | SPC25 | NEK11 | 2 | 3 | -1 | 1 | 4 | 2 | 2 | 0.04 | 169745736 | 130851589 | tier1 | Out-of-frame | 16686 | NA | 0 |
| SARC | TCGA-DX-AB37-01A | TCGA-DX-AB37 | PLXND1|NEK11 | PLXND1 | NEK11 | 3 | 3 | -1 | 1 | 45 | 38 | 34 | 0.21 | 129304795 | 131068401 | tier1 | Out-of-frame | 13083 | NA | 0.37263 |
| BRCA | TCGA-D8-A140-01A | TCGA-D8-A140 | PLOD2|PLSCR4 | PLOD2 | PLSCR4 | 3 | 3 | -1 | -1 | 24 | 15 | 15 | 0.01 | 145878668 | 145939879 | tier1 | CDS-5UTR | 13042 | NA | 0.3578 |
| BRCA | TCGA-D8-A27N-01A | TCGA-D8-A27N | EHHADH|ABCC5 | EHHADH | ABCC5 | 3 | 3 | -1 | -1 | 2 | 1 | 1 | 0.81 | 184922204 | 183696439 | tier3 | In-frame | 5406 | NA | 0.35562 |
| PRAD | TCGA-HC-7818-01A | TCGA-HC-7818 | CMTM4|KLHL24 | CMTM4 | KLHL24 | 16 | 3 | -1 | 1 | 2 | 3 | 3 | 1.1 | 66655965 | 183361268 | tier3 | CDS-5UTR | 3893 | NA | 0.34869 |
| LUAD | TCGA-91-8499-01A | TCGA-91-8499 | SENP2|CLCN2 | SENP2 | CLCN2 | 3 | 3 | 1 | -1 | 6 | 1 | 1 | 2.3 | 185304302 | 184076919 | tier2 | Out-of-frame | 15573 | NA | 0 |
| BRCA | TCGA-AR-A1AO-01A | TCGA-AR-A1AO | GCFC1|TP53I3 | GCFC1 | TP53I3 | 21 | 2 | -1 | -1 | 2 | 2 | 2 | 0.99 | 34131391 | 24300631 | tier3 | In-frame | 7010 | NA | 0.3568 |
| KIRP | TCGA-G7-6792-01A | TCGA-G7-6792 | MYT1L|POMC | MYT1L | POMC | 2 | 2 | -1 | -1 | 4 | 2 | 2 | 1.2 | 2057750 | 25387661 | tier1 | 5UTR-5UTR | 11027 | NA | 0.35751 |
| BLCA | TCGA-G2-A3VY-01A | TCGA-G2-A3VY | WDSUB1|GPD2 | WDSUB1 | GPD2 | 2 | 2 | -1 | 1 | 5 | 5 | 2 | 1.4 | 160104883 | 157332610 | tier1 | CDS-5UTR | 19820 | NA | 0 |
| LGG | TCGA-QH-A6XC-01A | TCGA-QH-A6XC | CTNND2|NRBP1 | CTNND2 | NRBP1 | 5 | 2 | -1 | 1 | 59 | 36 | 31 | 0.004 | 11732248 | 27656540 | tier1 | In-frame | 4381 | NA | 0.38372 |
| BLCA | TCGA-UY-A9PE-01A | TCGA-UY-A9PE | CERS6|PSMD14 | CERS6 | PSMD14 | 2 | 2 | 1 | 1 | 3 | 2 | 2 | 0.48 | 169574488 | 162223989 | tier1 | Out-of-frame | 3578 | NA | 0.34586 |
| OV | TCGA-23-2081-01A | TCGA-23-2081 | PKP4|PDE1A | PKP4 | PDE1A | 2 | 2 | 1 | -1 | 12 | 28 | 28 | 1 | 159459616 | 183011879 | tier1 | In-frame | 12931 | NA | 0.36672 |
| PRAD | TCGA-V1-A8MF-01A | TCGA-V1-A8MF | GREB1|PDE1A | GREB1 | PDE1A | 2 | 2 | 1 | -1 | 2 | 1 | 1 | 1.5 | 11742668 | 183387113 | tier3 | CDS-5UTR | 7421 | NA | 0.35294 |
| BLCA | TCGA-CF-A1HS-01A | TCGA-CF-A1HS | FRMD6|RTN4 | FRMD6 | RTN4 | 14 | 2 | 1 | -1 | 8 | 6 | 6 | 0.019 | 52037128 | 55214834 | tier1 | 5UTR-CDS | 6730 | NA | 0.36755 |
| SKCM | TCGA-EB-A3XC-01A | TCGA-EB-A3XC | C2orf43|RTN4 | C2orf43 | RTN4 | 2 | 2 | -1 | -1 | 17 | 7 | 7 | 0.49 | 20939731 | 55214834 | tier1 | In-frame | 2688 | NA | 0 |
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