Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LGG | TCGA-DU-7006-01A | TCGA-DU-7006 | GNA13|NR3C1 | GNA13 | NR3C1 | 17 | 5 | -1 | -1 | 8 | 9 | 8 | 0.47 | 63049620 | 142662290 | tier1 | Out-of-frame | 7167 | NA | 0.38788 |
| BRCA | TCGA-E9-A1R7-01A | TCGA-E9-A1R7 | FAM157A|C9 | FAM157A | C9 | 3 | 5 | 1 | -1 | 7 | 1 | 1 | 100 | 197894742 | 39316131 | tier3 | Out-of-frame | 6064 | NA | 0.34337 |
| ESCA | TCGA-L5-A8NE-01A | TCGA-L5-A8NE | RICTOR|C9 | RICTOR | C9 | 5 | 5 | -1 | -1 | 5 | 12 | 11 | 3.2 | 39074213 | 39342298 | tier1 | Out-of-frame | 14675 | non-validated | 0 |
| LGG | TCGA-HT-A614-01A | TCGA-HT-A614 | LHFPL2|CSNK1A1 | LHFPL2 | CSNK1A1 | 5 | 5 | -1 | -1 | 6 | 2 | 2 | 0.09 | 77860636 | 148904734 | tier1 | 5UTR-CDS | 9321 | NA | 0.37996 |
| LIHC | TCGA-ZP-A9D4-01A | TCGA-ZP-A9D4 | UBLCP1|CSNK1A1 | UBLCP1 | CSNK1A1 | 5 | 5 | 1 | -1 | 19 | 14 | 14 | 0.52 | 158696077 | 148876423 | tier1 | In-frame | 19126 | NA | 0 |
| SARC | TCGA-3B-A9HV-01A | TCGA-3B-A9HV | DOCK3|CSNK1A1 | DOCK3 | CSNK1A1 | 3 | 5 | 1 | -1 | 7 | 5 | 5 | 6.4 | 50816189 | 148904734 | tier1 | Out-of-frame | 5029 | NA | 0.38175 |
| SKCM | TCGA-FS-A1ZJ-06A | TCGA-FS-A1ZJ | RNF130|HRH2 | RNF130 | HRH2 | 5 | 5 | -1 | 1 | 38 | 41 | 37 | 0.007 | 179467453 | 175109712 | tier1 | CDS-5UTR | 14760 | NA | 0 |
| LIHC | TCGA-BC-A10Y-01A | TCGA-BC-A10Y | EIF4A2|KNG1 | EIF4A2 | KNG1 | 3 | 3 | 1 | 1 | 6635 | 4161 | 3743 | 0.23 | 186504062 | 186461494 | tier1 | In-frame | 5455 | NA | 0.37103 |
| BRCA | TCGA-D8-A1XQ-01A | TCGA-D8-A1XQ | RAD18|CD86 | RAD18 | CD86 | 3 | 3 | -1 | 1 | 2 | 2 | 2 | 2 | 8940578 | 121810448 | tier4 | In-frame | 14158 | NA | 0 |
| KIRC | TCGA-B0-4841-01A | TCGA-B0-4841 | KPNA1|CD86 | KPNA1 | CD86 | 3 | 3 | -1 | 1 | 5 | 13 | 13 | 0.66 | 122233604 | 121836895 | tier1 | 5UTR-CDS | 9092 | NA | 0.37871 |
| LUSC | TCGA-58-A46L-01A | TCGA-58-A46L | C3orf52|CD86 | C3orf52 | CD86 | 3 | 3 | 1 | 1 | 2 | 1 | 1 | 0.76 | 111821812 | 121836895 | tier2 | Out-of-frame | 2712 | NA | 0 |
| BLCA | TCGA-4Z-AA7Q-01A | TCGA-4Z-AA7Q | NCK1|PCCB | NCK1 | PCCB | 3 | 3 | 1 | 1 | 29 | 19 | 19 | 0.043 | 136581161 | 136002679 | tier1 | 5UTR-CDS | 11156 | NA | 0.3767 |
| CESC | TCGA-VS-A953-01A | TCGA-VS-A953 | EXOC6B|PCCB | EXOC6B | PCCB | 2 | 3 | -1 | 1 | 21 | 23 | 21 | 0.37 | 73052927 | 136045645 | tier1 | Out-of-frame | 5912 | NA | 0.3538 |
| KIRP | TCGA-G7-6793-01A | TCGA-G7-6793 | FNDC3B|BCHE | FNDC3B | BCHE | 3 | 3 | 1 | -1 | 191 | 174 | 167 | 2.4 | 171851336 | 165504099 | tier1 | Out-of-frame | 6605 | NA | 0.35072 |
| MESO | TCGA-3H-AB3M-01A | TCGA-3H-AB3M | SEPT9|COL7A1 | SEPT9 | COL7A1 | 17 | 3 | 1 | -1 | 117 | 62 | 60 | 0.035 | 75303279 | 48624122 | tier1 | 5UTR-CDS | 15604 | NA | 0 |
| BLCA | TCGA-XF-A9ST-01A | TCGA-XF-A9ST | UQCRC1|PRKAR2A | UQCRC1 | PRKAR2A | 3 | 3 | -1 | -1 | 60 | 34 | 30 | 1.6 | 48637496 | 48785373 | tier1 | CDS-3UTR | 19288 | NA | 0 |
| BRCA | TCGA-A1-A0SK-01A | TCGA-A1-A0SK | IP6K2|PRKAR2A | IP6K2 | PRKAR2A | 3 | 3 | -1 | -1 | 37 | 236 | 224 | 1.7 | 48754590 | 48802782 | tier2 | 5UTR-CDS | 8290 | NA | 0.37343 |
| UCEC | TCGA-PG-A914-01A | TCGA-PG-A914 | IP6K2|PRKAR2A | IP6K2 | PRKAR2A | 3 | 3 | -1 | -1 | 25 | 30 | 29 | 1.7 | 48754590 | 48793877 | tier1 | 5UTR-CDS | 8291 | NA | 0.37343 |
| COAD | TCGA-D5-6534-01A | TCGA-D5-6534 | ARL8B|USP4 | ARL8B | USP4 | 3 | 3 | 1 | -1 | 15 | 16 | 15 | 0.34 | 5164273 | 49339975 | tier1 | In-frame | 1408 | NA | 0.364 |
| LIHC | TCGA-2Y-A9GZ-01A | TCGA-2Y-A9GZ | QRICH1|USP4 | QRICH1 | USP4 | 3 | 3 | -1 | -1 | 21 | 5 | 5 | 1.4 | 49114142 | 49343321 | tier1 | In-frame | 14013 | NA | 0 |
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