Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SKCM | TCGA-D3-A1Q3-06A | TCGA-D3-A1Q3 | OXCT1|GHR | OXCT1 | GHR | 5 | 5 | -1 | 1 | 5 | 2 | 2 | 1.9 | 41840553 | 42565966 | tier1 | CDS-5UTR | 12121 | NA | 0.37368 |
| PAAD | TCGA-3A-A9IH-01A | TCGA-3A-A9IH | ARHGEF16|ITK | ARHGEF16 | ITK | 1 | 5 | 1 | 1 | 2 | 2 | 1 | 0.14 | 3371375 | 156670633 | tier2 | 5UTR-CDS | 1301 | NA | 0.38654 |
| ACC | TCGA-OR-A5J1-01A | TCGA-OR-A5J1 | DAB2|ARSB | DAB2 | ARSB | 5 | 5 | -1 | -1 | 46 | 24 | 22 | 3 | 39392467 | 78265015 | tier1 | In-frame | 4529 | NA | 0.36796 |
| SKCM | TCGA-XV-AAZY-01A | TCGA-XV-AAZY | XRCC6|ARSB | XRCC6 | ARSB | 22 | 5 | 1 | -1 | 41 | 74 | 72 | 1.8 | 42024234 | 78265015 | tier1 | In-frame | 19985 | NA | 0 |
| LUSC | TCGA-77-7142-01A | TCGA-77-7142 | SERINC5|THBS4 | SERINC5 | THBS4 | 5 | 5 | -1 | 1 | 121 | 80 | 69 | 0.77 | 79470777 | 79372678 | tier1 | In-frame | 15644 | NA | 0 |
| BRCA | TCGA-AR-A0TU-01A | TCGA-AR-A0TU | MYO10|NPR3 | MYO10 | NPR3 | 5 | 5 | -1 | 1 | 2 | 6 | 6 | 2.1 | 16877718 | 32724804 | tier4 | Out-of-frame | 10942 | NA | 0.37019 |
| HNSC | TCGA-CQ-7067-01A | TCGA-CQ-7067 | C5orf42|NPR3 | C5orf42 | NPR3 | 5 | 5 | -1 | 1 | 4 | 1 | 1 | 0.24 | 37153842 | 32774814 | tier3 | In-frame | 2735 | NA | 0 |
| SKCM | TCGA-BF-AAP6-01A | TCGA-BF-AAP6 | APC|SLC27A6 | APC | SLC27A6 | 5 | 5 | 1 | 1 | 55 | 58 | 52 | 0.03 | 112043579 | 128364038 | tier1 | 5UTR-CDS | 1112 | NA | 0.38038 |
| BRCA | TCGA-AR-A0TW-01A | TCGA-AR-A0TW | ZFR|TARS | ZFR | TARS | 5 | 5 | -1 | 1 | 9 | 1 | 1 | 0.73 | 32444335 | 33441152 | tier4 | CDS-5UTR | 20291 | NA | 0 |
| SKCM | TCGA-D3-A51N-06A | TCGA-D3-A51N | G3BP1|PDE4D | G3BP1 | PDE4D | 5 | 5 | 1 | -1 | 40 | 30 | 25 | 0.071 | 151170623 | 59284544 | tier1 | In-frame | 6875 | NA | 0.37975 |
| SKCM | TCGA-EE-A2M7-06A | TCGA-EE-A2M7 | RNF145|PDE4D | RNF145 | PDE4D | 5 | 5 | -1 | -1 | 11 | 13 | 9 | 3.7 | 158596687 | 58511794 | tier1 | In-frame | 14772 | NA | 0 |
| SARC | TCGA-HB-A3YV-01A | TCGA-HB-A3YV | RNASEH2B|AGXT2 | RNASEH2B | AGXT2 | 13 | 5 | 1 | -1 | 3 | 13 | 12 | 1.6 | 51484276 | 35014224 | tier1 | Out-of-frame | 14722 | NA | 0 |
| SKCM | TCGA-D9-A6EC-06A | TCGA-D9-A6EC | FBXL7|AGXT2 | FBXL7 | AGXT2 | 5 | 5 | 1 | -1 | 5 | 1 | 1 | 1.3 | 15616181 | 35003966 | tier3 | Out-of-frame | 6329 | NA | 0.35101 |
| SKCM | TCGA-D3-A1Q3-06A | TCGA-D3-A1Q3 | WDR70|AGXT2 | WDR70 | AGXT2 | 5 | 5 | 1 | -1 | 77 | 39 | 36 | 0.25 | 37396672 | 35014224 | tier1 | In-frame | 19801 | NA | 0 |
| ACC | TCGA-OR-A5K9-01A | TCGA-OR-A5K9 | MLLT1|PRLR | MLLT1 | PRLR | 19 | 5 | -1 | -1 | 6 | 1 | 1 | 0.54 | 6270590 | 35118224 | tier2 | CDS-5UTR | 10502 | NA | 0.37653 |
| COAD | TCGA-D5-6924-01A | TCGA-D5-6924 | NNT|PRLR | NNT | PRLR | 5 | 5 | 1 | -1 | 2 | 2 | 2 | 0.78 | 43628489 | 35072846 | tier3 | In-frame | 11627 | NA | 0.3738 |
| SKCM | TCGA-D3-A3CC-06A | TCGA-D3-A3CC | AEBP2|PRLR | AEBP2 | PRLR | 12 | 5 | 1 | -1 | 30 | 16 | 14 | 0.12 | 19646920 | 35118224 | tier1 | CDS-5UTR | 563 | NA | 0.38277 |
| LUAD | TCGA-95-A4VK-01A | TCGA-95-A4VK | ZNF354A|SLC12A7 | ZNF354A | SLC12A7 | 5 | 5 | -1 | -1 | 12 | 5 | 3 | 0.47 | 178152377 | 1089243 | tier1 | Out-of-frame | 20474 | NA | 0 |
| SKCM | TCGA-FS-A1ZG-06A | TCGA-FS-A1ZG | MYO10|SLC12A7 | MYO10 | SLC12A7 | 5 | 5 | -1 | -1 | 77 | 43 | 22 | 0.01 | 16794755 | 1094363 | tier1 | Out-of-frame | 10944 | NA | 0.37112 |
| BLCA | TCGA-FJ-A3ZF-01A | TCGA-FJ-A3ZF | FNIP1|IL5 | FNIP1 | IL5 | 5 | 5 | -1 | -1 | 5 | 3 | 3 | 0.19 | 131132523 | 131878818 | tier1 | Out-of-frame | 6623 | NA | 0.35377 |
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