Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BLCA | TCGA-FD-A6TI-01A | TCGA-FD-A6TI | ARID1B|SMOC2 | ARID1B | SMOC2 | 6 | 6 | 1 | 1 | 6 | 6 | 6 | 0.27 | 157150555 | 169051361 | tier1 | Out-of-frame | 1358 | NA | 0.36932 |
| UCEC | TCGA-AJ-A3IA-01A | TCGA-AJ-A3IA | ELOVL2|SMOC2 | ELOVL2 | SMOC2 | 6 | 6 | -1 | 1 | 4 | 2 | 2 | 1.6 | 11044461 | 169051361 | tier1 | Out-of-frame | 5532 | NA | 0.34144 |
| BRCA | TCGA-OL-A5RZ-01A | TCGA-OL-A5RZ | TBC1D22B|CCND3 | TBC1D22B | CCND3 | 6 | 6 | 1 | -1 | 13 | 5 | 5 | 1 | 37254848 | 41908323 | tier1 | In-frame | 17481 | NA | 0 |
| PRAD | TCGA-G9-6353-01A | TCGA-G9-6353 | GMDS|CCND3 | GMDS | CCND3 | 6 | 6 | -1 | -1 | 8 | 8 | 6 | 0.012 | 2245555 | 41905132 | tier1 | In-frame | 7141 | NA | 0.37344 |
| UCS | TCGA-NA-A4QV-01A | TCGA-NA-A4QV | MED20|CCND3 | MED20 | CCND3 | 6 | 6 | -1 | -1 | 13 | 5 | 5 | 2.5 | 41884523 | 41908323 | tier1 | Out-of-frame | 10205 | NA | 0.36789 |
| GBM | TCGA-06-0129-01A | TCGA-06-0129 | MDGA1|PTK7 | MDGA1 | PTK7 | 6 | 6 | -1 | 1 | 5 | 19 | 17 | 0.039 | 37623476 | 43126555 | tier1 | In-frame | 10110 | NA | 0.36167 |
| BRCA | TCGA-D8-A1JM-01A | TCGA-D8-A1JM | MYO6|SENP6 | MYO6 | SENP6 | 6 | 6 | 1 | 1 | 2 | 3 | 2 | 0.004 | 76459140 | 76405520 | tier4 | 5UTR-CDS | 11004 | NA | 0.3713 |
| BRCA | TCGA-A8-A094-01A | TCGA-A8-A094 | ZNF544|SENP6 | ZNF544 | SENP6 | 19 | 6 | 1 | 1 | 15 | 8 | 7 | 0.02 | 58741828 | 76385576 | tier1 | 5UTR-CDS | 20547 | non-validated | 0 |
| HNSC | TCGA-DQ-7589-01A | TCGA-DQ-7589 | MYO6|SENP6 | MYO6 | SENP6 | 6 | 6 | 1 | 1 | 5 | 4 | 1 | 0.004 | 76459140 | 76419243 | tier3 | 5UTR-CDS | 11005 | NA | 0.3713 |
| LUAD | TCGA-05-4244-01A | TCGA-05-4244 | MYO6|SENP6 | MYO6 | SENP6 | 6 | 6 | 1 | 1 | 8 | 8 | 8 | 0.004 | 76459140 | 76385151 | tier1 | 5UTR-CDS | 11000 | NA | 0.3713 |
| LUAD | TCGA-44-4112-01A | TCGA-44-4112 | MYO6|SENP6 | MYO6 | SENP6 | 6 | 6 | 1 | 1 | 5 | 2 | 2 | 0.004 | 76459140 | 76405520 | tier1 | 5UTR-CDS | 11001 | non-validated | 0.3713 |
| UCEC | TCGA-AJ-A3EM-01A | TCGA-AJ-A3EM | MYO6|SENP6 | MYO6 | SENP6 | 6 | 6 | 1 | 1 | 12 | 12 | 10 | 0.004 | 76459140 | 76405520 | tier1 | 5UTR-CDS | 11002 | NA | 0.3713 |
| UCEC | TCGA-B5-A0JN-01A | TCGA-B5-A0JN | MYO6|SENP6 | MYO6 | SENP6 | 6 | 6 | 1 | 1 | 5 | 4 | 4 | 0.004 | 76459140 | 76423229 | tier1 | 5UTR-CDS | 11003 | non-validated | 0.3713 |
| UCS | TCGA-N5-A4RJ-01A | TCGA-N5-A4RJ | MYO6|SENP6 | MYO6 | SENP6 | 6 | 6 | 1 | 1 | 8 | 5 | 5 | 0.004 | 76527381 | 76421044 | tier1 | In-frame | 11006 | NA | 0.3713 |
| BLCA | TCGA-K4-A3WU-01B | TCGA-K4-A3WU | BCKDHB|TTK | BCKDHB | TTK | 6 | 6 | 1 | 1 | 16 | 17 | 14 | 0.14 | 80912929 | 80751836 | tier1 | In-frame | 2013 | NA | 0.36894 |
| KIRC | TCGA-A3-3311-01A | TCGA-A3-3311 | NFKBIE|SLC29A1 | NFKBIE | SLC29A1 | 6 | 6 | -1 | 1 | 63 | 35 | 31 | 0.22 | 44227780 | 44194997 | tier1 | CDS-5UTR | 11514 | NA | 0.37216 |
| ESCA | TCGA-JY-A6FD-01A | TCGA-JY-A6FD | DSP|LY86 | DSP | LY86 | 6 | 6 | 1 | 1 | 261 | 1223 | 1155 | 0.42 | 7542318 | 6649858 | tier1 | Out-of-frame | 5127 | NA | 0.36491 |
| OV | TCGA-25-1326-01A | TCGA-25-1326 | FAM53B|LY86 | FAM53B | LY86 | 10 | 6 | -1 | 1 | 2 | 4 | 4 | 0.23 | 126384727 | 6654777 | tier2 | Out-of-frame | 6188 | NA | 0.34699 |
| SKCM | TCGA-GN-A268-06A | TCGA-GN-A268 | PAK1IP1|MEP1A | PAK1IP1 | MEP1A | 6 | 6 | 1 | 1 | 132 | 62 | 50 | 0.64 | 10702872 | 46787266 | tier1 | In-frame | 12211 | NA | 0.37662 |
| SARC | TCGA-X6-A7WC-01A | TCGA-X6-A7WC | ZNF131|GHR | ZNF131 | GHR | 5 | 5 | 1 | 1 | 3 | 3 | 3 | 1.9 | 43068319 | 42688992 | tier1 | NA | 20360 | NA | 0 |
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