Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-AN-A0AR-01A | TCGA-AN-A0AR | TFAP2A|MAK | TFAP2A | MAK | 6 | 6 | -1 | -1 | 13 | 8 | 7 | 0.039 | 10404741 | 10764839 | tier1 | Out-of-frame | 17695 | NA | 0 |
| PRAD | TCGA-EJ-7327-01A | TCGA-EJ-7327 | GNPDA1|RNGTT | GNPDA1 | RNGTT | 5 | 6 | -1 | -1 | 3 | 3 | 2 | 5.7 | 141384497 | 89616159 | tier1 | Out-of-frame | 7250 | NA | 0.3501 |
| SARC | TCGA-DX-AB2T-01A | TCGA-DX-AB2T | C18orf25|GABRR2 | C18orf25 | GABRR2 | 18 | 6 | 1 | -1 | 2 | 1 | 1 | 0.093 | 43754296 | 90009584 | tier3 | 5UTR-CDS | 2542 | NA | 0 |
| SARC | TCGA-X6-A7WB-01A | TCGA-X6-A7WB | FTSJD2|PPARD | FTSJD2 | PPARD | 6 | 6 | 1 | 1 | 8 | 4 | 1 | 0.004 | 37403538 | 35378764 | tier2 | CDS-5UTR | 6819 | NA | 0.38036 |
| COAD | TCGA-F4-6854-01A | TCGA-F4-6854 | MAP7|OPRM1 | MAP7 | OPRM1 | 6 | 6 | -1 | 1 | 3 | 3 | 3 | 0.028 | 136732758 | 154410961 | tier1 | Out-of-frame | 9924 | NA | 0.37293 |
| LUSC | TCGA-63-A5MT-01A | TCGA-63-A5MT | MSL2|OPRM1 | MSL2 | OPRM1 | 3 | 6 | -1 | 1 | 7 | 4 | 4 | 0.41 | 135913814 | 154410961 | tier1 | Out-of-frame | 10734 | NA | 0.37257 |
| LGG | TCGA-TM-A7CF-01A | TCGA-TM-A7CF | CHERP|RHAG | CHERP | RHAG | 19 | 6 | -1 | -1 | 7 | 8 | 8 | 3.4 | 16652681 | 49587075 | tier1 | In-frame | 3663 | non-validated | 0.36537 |
| LUAD | TCGA-86-7953-01A | TCGA-86-7953 | ARHGEF3|RHAG | ARHGEF3 | RHAG | 3 | 6 | -1 | -1 | 39 | 39 | 36 | 0.27 | 56916320 | 49587075 | tier2 | Out-of-frame | 1328 | NA | 0.36786 |
| PRAD | TCGA-V1-A8MG-01A | TCGA-V1-A8MG | KCTD20|STK38 | KCTD20 | STK38 | 6 | 6 | 1 | -1 | 6 | 6 | 6 | 0.72 | 36438034 | 36493419 | tier1 | Out-of-frame | 8619 | NA | 0.37352 |
| UCEC | TCGA-PG-A915-01A | TCGA-PG-A915 | EFHC1|IL17A | EFHC1 | IL17A | 6 | 6 | 1 | 1 | 3 | 2 | 2 | 1.3 | 52344585 | 52052401 | tier1 | Out-of-frame | 5345 | NA | 0.35345 |
| BLCA | TCGA-GV-A3QH-01A | TCGA-GV-A3QH | USP38|IL17F | USP38 | IL17F | 4 | 6 | 1 | -1 | 12 | 18 | 16 | 0.017 | 144119077 | 52101966 | tier1 | Out-of-frame | 19376 | NA | 0 |
| BRCA | TCGA-AN-A0AL-01A | TCGA-AN-A0AL | TRMT11|ICK | TRMT11 | ICK | 6 | 6 | 1 | -1 | 4 | 2 | 2 | 0.43 | 126307768 | 52884157 | tier1 | Out-of-frame | 18700 | NA | 0 |
| LUAD | TCGA-55-7815-01A | TCGA-55-7815 | ETHE1|BMP5 | ETHE1 | BMP5 | 19 | 6 | -1 | -1 | 2 | 2 | 2 | 1.6 | 44030667 | 55639041 | tier4 | In-frame | 5846 | NA | 0.36232 |
| LGG | TCGA-TM-A7CF-02A | TCGA-TM-A7CF | MOBKL2A|PRDM13 | MOBKL2A | PRDM13 | 19 | 6 | -1 | 1 | 2 | 1 | 1 | 0.031 | 2076810 | 100060909 | tier3 | Out-of-frame | 10564 | validated | 0.35075 |
| BLCA | TCGA-GC-A3RB-01A | TCGA-GC-A3RB | ATAD5|PTP4A1 | ATAD5 | PTP4A1 | 17 | 6 | 1 | 1 | 9 | 6 | 6 | 0.3 | 29187630 | 64286341 | tier1 | CDS-5UTR | 1589 | NA | 0.35834 |
| LUSC | TCGA-33-AASB-01A | TCGA-33-AASB | LMBRD1|COL9A1 | LMBRD1 | COL9A1 | 6 | 6 | -1 | -1 | 4 | 1 | 1 | 0.37 | 70490386 | 71004266 | tier3 | Out-of-frame | 9393 | NA | 0.35487 |
| SARC | TCGA-FX-A2QS-01A | TCGA-FX-A2QS | CPSF6|COL9A1 | CPSF6 | COL9A1 | 12 | 6 | 1 | -1 | 328 | 273 | 259 | 0.026 | 69633486 | 70926784 | tier1 | Out-of-frame | 4153 | non-validated | 0.36779 |
| LUAD | TCGA-78-7220-01A | TCGA-78-7220 | TRMT11|SLC16A10 | TRMT11 | SLC16A10 | 6 | 6 | 1 | 1 | 2 | 1 | 1 | 0.83 | 126314968 | 111527795 | tier3 | In-frame | 18704 | NA | 0 |
| COAD | TCGA-AY-6196-01A | TCGA-AY-6196 | ATG5|GPR126 | ATG5 | GPR126 | 6 | 6 | -1 | 1 | 4 | 3 | 3 | 0.23 | 106756239 | 142736106 | tier1 | Out-of-frame | 1632 | NA | 0.3598 |
| SARC | TCGA-DX-A6BH-01A | TCGA-DX-A6BH | FOXP2|EPM2A | FOXP2 | EPM2A | 7 | 6 | 1 | -1 | 2 | 2 | 2 | 0.088 | 113803143 | 145823711 | tier2 | 5UTR-CDS | 6700 | NA | 0.35773 |
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