Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUSC | TCGA-77-A5GB-01B | TCGA-77-A5GB | C12orf5|PRR4 | C12orf5 | PRR4 | 12 | 12 | 1 | -1 | 50 | 39 | 34 | 100 | 4440483 | 11001006 | tier1 | In-frame | 2426 | NA | 0 |
| SARC | TCGA-DX-A240-01A | TCGA-DX-A240 | CPNE8|PRMT8 | CPNE8 | PRMT8 | 12 | 12 | -1 | 1 | 3 | 5 | 5 | 3.6 | 39266806 | 3649772 | tier1 | In-frame | 4139 | validated | 0.35439 |
| COAD | TCGA-NH-A50U-01A | TCGA-NH-A50U | PLEKHA5|FGF6 | PLEKHA5 | FGF6 | 12 | 12 | 1 | -1 | 34 | 11 | 3 | 2.1 | 19283064 | 4553402 | tier1 | In-frame | 13000 | NA | 0.36868 |
| PRAD | TCGA-KK-A8I9-01A | TCGA-KK-A8I9 | ETV6|DUSP16 | ETV6 | DUSP16 | 12 | 12 | 1 | -1 | 3 | 1 | 1 | 0.98 | 11905513 | 12672934 | tier3 | Out-of-frame | 5865 | NA | 0.3767 |
| UCS | TCGA-N8-A56S-01A | TCGA-N8-A56S | LRP6|DUSP16 | LRP6 | DUSP16 | 12 | 12 | -1 | -1 | 18 | 13 | 11 | 0.03 | 12397196 | 12674397 | tier1 | CDS-5UTR | 9543 | NA | 0.37733 |
| SKCM | TCGA-WE-A8ZX-06A | TCGA-WE-A8ZX | BBX|SLC38A1 | BBX | SLC38A1 | 3 | 12 | 1 | -1 | 10 | 1 | 1 | 1.1 | 107241954 | 46602910 | tier2 | 5UTR-CDS | 1959 | NA | 0.34705 |
| LUAD | TCGA-55-A493-01A | TCGA-55-A493 | LMBR1L|VDR | LMBR1L | VDR | 12 | 12 | -1 | -1 | 2 | 1 | 1 | 0.11 | 49504267 | 48240591 | tier3 | Out-of-frame | 9392 | NA | 0.37394 |
| STAD | TCGA-FP-8631-01A | TCGA-FP-8631 | NFIX|VDR | NFIX | VDR | 19 | 12 | 1 | -1 | 4 | 15 | 13 | 0.08 | 13136366 | 48272898 | tier1 | CDS-5UTR | 11506 | NA | 0.37864 |
| SARC | TCGA-DX-A6BH-01A | TCGA-DX-A6BH | TNFAIP3|IL26 | TNFAIP3 | IL26 | 6 | 12 | 1 | -1 | 38 | 37 | 31 | 0.17 | 138192659 | 68595863 | tier1 | Out-of-frame | 18328 | NA | 0 |
| SARC | TCGA-DX-AB2S-01A | TCGA-DX-AB2S | TSPAN8|IL26 | TSPAN8 | IL26 | 12 | 12 | -1 | -1 | 13 | 13 | 13 | 0.057 | 71676496 | 68595863 | tier1 | 5UTR-CDS | 18806 | NA | 0 |
| SARC | TCGA-DX-A8BK-01A | TCGA-DX-A8BK | C19orf2|CHD4 | C19orf2 | CHD4 | 19 | 12 | 1 | -1 | 4 | 5 | 5 | 0.014 | 30477324 | 6682435 | tier1 | Out-of-frame | 2552 | NA | 0 |
| PAAD | TCGA-HZ-8002-01A | TCGA-HZ-8002 | PLEKHA5|ACRBP | PLEKHA5 | ACRBP | 12 | 12 | 1 | -1 | 3 | 4 | 3 | 0.45 | 19285384 | 6754503 | tier1 | Out-of-frame | 12999 | NA | 0.35489 |
| GBM | TCGA-06-0129-01A | TCGA-06-0129 | COQ10A|USP5 | COQ10A | USP5 | 12 | 12 | 1 | 1 | 4 | 27 | 21 | 2.3 | 56663345 | 6964565 | tier1 | In-frame | 4069 | NA | 0.36121 |
| LUSC | TCGA-94-7943-01A | TCGA-94-7943 | ARID2|SPSB2 | ARID2 | SPSB2 | 12 | 12 | 1 | -1 | 3 | 8 | 5 | 0.13 | 46205334 | 6991451 | tier4 | NA | 1368 | non-validated | 0.35309 |
| SARC | TCGA-FX-A3TO-01A | TCGA-FX-A3TO | SOX5|SPSB2 | SOX5 | SPSB2 | 12 | 12 | -1 | -1 | 2 | 8 | 8 | 0.37 | 23998917 | 6991451 | tier2 | NA | 16623 | NA | 0 |
| LIHC | TCGA-2Y-A9H0-01A | TCGA-2Y-A9H0 | UACA|PTPN6 | UACA | PTPN6 | 15 | 12 | -1 | 1 | 6 | 9 | 9 | 2.1 | 70987356 | 7069090 | tier1 | Out-of-frame | 19015 | NA | 0 |
| SARC | TCGA-FX-A3TO-01A | TCGA-FX-A3TO | C12orf5|PTPN6 | C12orf5 | PTPN6 | 12 | 12 | 1 | 1 | 17 | 6 | 5 | 0.4 | 4430469 | 7060772 | tier1 | In-frame | 2427 | NA | 0 |
| LUSC | TCGA-85-8584-01A | TCGA-85-8584 | FOXJ2|LPCAT3 | FOXJ2 | LPCAT3 | 12 | 12 | 1 | -1 | 61 | 16 | 15 | 0.45 | 8186429 | 7092700 | tier1 | 5UTR-CDS | 6639 | NA | 0.3439 |
| LUSC | TCGA-85-8584-01A | TCGA-85-8584 | LRRC23|LPCAT3 | LRRC23 | LPCAT3 | 12 | 12 | 1 | -1 | 5 | 2 | 2 | 0.037 | 7015826 | 7092700 | tier1 | In-frame | 9568 | NA | 0.34798 |
| LGG | TCGA-RY-A83Z-01A | TCGA-RY-A83Z | BRAP|KLRB1 | BRAP | KLRB1 | 12 | 12 | -1 | -1 | 19 | 13 | 13 | 0.57 | 112123515 | 9754195 | tier1 | In-frame | 2193 | NA | 0.36259 |
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