Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-EW-A1OW-01A | TCGA-EW-A1OW | CELF1|MTCH2 | CELF1 | MTCH2 | 11 | 11 | -1 | -1 | 26 | 13 | 10 | 0.71 | 47586826 | 47644328 | tier1 | NA | 3501 | NA | 0.33295 |
| LUSC | TCGA-43-6771-01A | TCGA-43-6771 | CELF1|MTCH2 | CELF1 | MTCH2 | 11 | 11 | -1 | -1 | 129 | 106 | 98 | 0.71 | 47494640 | 47660603 | tier1 | Out-of-frame | 3500 | NA | 0.33295 |
| BRCA | TCGA-E9-A22G-01A | TCGA-E9-A22G | SORL1|TECTA | SORL1 | TECTA | 11 | 11 | 1 | 1 | 242 | 243 | 163 | 0.83 | 121403261 | 121058541 | tier1 | In-frame | 16607 | NA | 0 |
| GBM | TCGA-26-5132-01A | TCGA-26-5132 | PATL1|TECTA | PATL1 | TECTA | 11 | 11 | -1 | 1 | 23 | 117 | 101 | 3.8 | 59434326 | 121058541 | tier1 | Out-of-frame | 12316 | validated | 0.34856 |
| HNSC | TCGA-CV-7177-01A | TCGA-CV-7177 | DIP2C|TECTA | DIP2C | TECTA | 10 | 11 | -1 | 1 | 6 | 1 | 1 | 2.1 | 518379 | 120996011 | tier2 | Out-of-frame | 4847 | NA | 0.34759 |
| LUAD | TCGA-86-8358-01A | TCGA-86-8358 | RAB39|TECTA | RAB39 | TECTA | 11 | 11 | 1 | 1 | 6 | 3 | 3 | 0.48 | 107799521 | 121058541 | tier1 | In-frame | 14078 | NA | 0 |
| OV | TCGA-13-1487-01A | TCGA-13-1487 | SORL1|TECTA | SORL1 | TECTA | 11 | 11 | 1 | 1 | 18 | 14 | 11 | 0.83 | 121360819 | 121058541 | tier1 | In-frame | 16606 | validated | 0 |
| SARC | TCGA-FX-A3TO-01A | TCGA-FX-A3TO | RTN4RL2|P2RX3 | RTN4RL2 | P2RX3 | 11 | 11 | 1 | 1 | 8 | 2 | 2 | 0.14 | 57235563 | 57135483 | tier1 | Out-of-frame | 15173 | NA | 0 |
| BRCA | TCGA-E2-A154-01A | TCGA-E2-A154 | FARP1|SIAE | FARP1 | SIAE | 13 | 11 | 1 | -1 | 2 | 3 | 3 | 1 | 99102023 | 124543777 | tier3 | 3UTR-5UTR | 6244 | NA | 0.34646 |
| COAD | TCGA-A6-6648-01A | TCGA-A6-6648 | SRSF4|SIAE | SRSF4 | SIAE | 1 | 11 | -1 | -1 | 2 | 3 | 2 | 0.47 | 29474261 | 124543777 | tier3 | 3UTR-5UTR | 16896 | NA | 0 |
| HNSC | TCGA-CV-5971-01A | TCGA-CV-5971 | CKM|SIAE | CKM | SIAE | 19 | 11 | -1 | -1 | 2 | 39 | 30 | 0.094 | 45809672 | 124543777 | tier3 | 3UTR-5UTR | 3751 | NA | 0.35061 |
| KIRC | TCGA-A3-3313-01A | TCGA-A3-3313 | GDA|SIAE | GDA | SIAE | 9 | 11 | 1 | -1 | 2 | 4 | 2 | 0.025 | 74867140 | 124543777 | tier4 | 3UTR-5UTR | 7017 | NA | 0.34425 |
| LGG | TCGA-R8-A6MK-01A | TCGA-R8-A6MK | PEA15|SIAE | PEA15 | SIAE | 1 | 11 | 1 | -1 | 2 | 4 | 1 | 0.044 | 160185166 | 124543777 | tier3 | 3UTR-5UTR | 12594 | NA | 0.36305 |
| LIHC | TCGA-FV-A3R3-01A | TCGA-FV-A3R3 | AC002094.1|SIAE | AC002094.1 | SIAE | 17 | 11 | -1 | -1 | 3 | 8 | 4 | 1.4 | 26694297 | 124543777 | tier1 | 3UTR-5UTR | 136 | non-validated | 0.32116 |
| LUAD | TCGA-55-6543-01A | TCGA-55-6543 | DHCR24|SIAE | DHCR24 | SIAE | 1 | 11 | -1 | -1 | 2 | 2 | 1 | 3 | 55315300 | 124543777 | tier3 | 3UTR-5UTR | 4780 | NA | 0.35013 |
| LUAD | TCGA-71-6725-01A | TCGA-71-6725 | HNRNPA2B1|SIAE | HNRNPA2B1 | SIAE | 7 | 11 | -1 | -1 | 2 | 63 | 44 | 0.017 | 26231467 | 124543777 | tier3 | 3UTR-5UTR | 7885 | NA | 0.36347 |
| PRAD | TCGA-G9-6356-01A | TCGA-G9-6356 | WAPAL|SIAE | WAPAL | SIAE | 10 | 11 | -1 | -1 | 2 | 1 | 1 | 1.3 | 88195014 | 124543777 | tier3 | 3UTR-5UTR | 19704 | NA | 0 |
| STAD | TCGA-BR-8486-01A | TCGA-BR-8486 | ENO1|SIAE | ENO1 | SIAE | 1 | 11 | -1 | -1 | 2 | 1 | 1 | 1.2 | 8921061 | 124543777 | tier3 | 3UTR-5UTR | 5588 | non-validated | 0.36534 |
| STAD | TCGA-HU-8610-01A | TCGA-HU-8610 | HNRNPA2B1|SIAE | HNRNPA2B1 | SIAE | 7 | 11 | -1 | -1 | 2 | 4 | 1 | 0.017 | 26231464 | 124543777 | tier3 | 3UTR-5UTR | 7886 | NA | 0.36347 |
| THCA | TCGA-EM-A22N-01A | TCGA-EM-A22N | DYNC1H1|SIAE | DYNC1H1 | SIAE | 14 | 11 | 1 | -1 | 2 | 7 | 6 | 0.82 | 102517128 | 124543777 | tier3 | 3UTR-5UTR | 5208 | NA | 0.34948 |
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