Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LIHC | TCGA-2Y-A9GZ-01A | TCGA-2Y-A9GZ | EXOSC9|MAPK10 | EXOSC9 | MAPK10 | 4 | 4 | 1 | -1 | 4 | 10 | 10 | 0.22 | 122728777 | 86952584 | tier1 | Out-of-frame | 5924 | NA | 0.38943 |
| PRAD | TCGA-KK-A6E0-01A | TCGA-KK-A6E0 | ARHGAP24|MAPK10 | ARHGAP24 | MAPK10 | 4 | 4 | 1 | -1 | 2 | 1 | 1 | 0.68 | 86700118 | 87115560 | tier2 | 5UTR-5UTR | 1238 | NA | 0.38865 |
| SARC | TCGA-SI-AA8C-01A | TCGA-SI-AA8C | ARHGAP24|MAPK10 | ARHGAP24 | MAPK10 | 4 | 4 | 1 | -1 | 14 | 17 | 14 | 0.68 | 86863426 | 86938528 | tier1 | Out-of-frame | 1239 | NA | 0.38865 |
| LIHC | TCGA-G3-A3CH-01A | TCGA-G3-A3CH | DDX60L|CPE | DDX60L | CPE | 4 | 4 | -1 | 1 | 4 | 2 | 2 | 0.048 | 169393606 | 166405574 | tier4 | Out-of-frame | 4679 | NA | 0.36759 |
| BLCA | TCGA-BT-A3PH-01A | TCGA-BT-A3PH | AP1B1|CLCN3 | AP1B1 | CLCN3 | 22 | 4 | -1 | 1 | 2 | 5 | 5 | 1 | 29723671 | 170623929 | tier4 | NA | 1058 | non-validated | 0.37171 |
| BLCA | TCGA-GV-A3QI-01A | TCGA-GV-A3QI | ASPH|CLCN3 | ASPH | CLCN3 | 8 | 4 | -1 | 1 | 2 | 9 | 4 | 1.3 | 62537096 | 170623929 | tier4 | NA | 1538 | NA | 0.36569 |
| BLCA | TCGA-FD-A3SM-01A | TCGA-FD-A3SM | TALDO1|CLCN3 | TALDO1 | CLCN3 | 11 | 4 | 1 | 1 | 2 | 17 | 12 | 0.091 | 765012 | 170623929 | tier3 | NA | 17358 | NA | 0 |
| BLCA | TCGA-FD-A3SM-01A | TCGA-FD-A3SM | TMBIM6|CLCN3 | TMBIM6 | CLCN3 | 12 | 4 | 1 | 1 | 2 | 13 | 10 | 0.78 | 50158717 | 170623929 | tier3 | NA | 17885 | NA | 0 |
| CESC | TCGA-EA-A3HS-01A | TCGA-EA-A3HS | PRDX6|CLCN3 | PRDX6 | CLCN3 | 1 | 4 | 1 | 1 | 2 | 4 | 2 | 5.1 | 173457946 | 170623929 | tier4 | NA | 13505 | NA | 0.36601 |
| KICH | TCGA-KL-8341-01A | TCGA-KL-8341 | CUX1|CLCN3 | CUX1 | CLCN3 | 7 | 4 | 1 | 1 | 2 | 9 | 9 | 0.94 | 101927249 | 170623929 | tier4 | NA | 4448 | non-validated | 0.37669 |
| KIRC | TCGA-AK-3444-01A | TCGA-AK-3444 | PLVAP|CLCN3 | PLVAP | CLCN3 | 19 | 4 | -1 | 1 | 2 | 34 | 18 | 6.6 | 17462264 | 170623929 | tier3 | NA | 13052 | NA | 0.36581 |
| KIRP | TCGA-BQ-5878-01A | TCGA-BQ-5878 | ACTG1|CLCN3 | ACTG1 | CLCN3 | 17 | 4 | -1 | 1 | 2 | 5 | 2 | 0.46 | 79476999 | 170623929 | tier3 | NA | 358 | NA | 0.37406 |
| LUSC | TCGA-56-7582-01A | TCGA-56-7582 | PKP1|CLCN3 | PKP1 | CLCN3 | 1 | 4 | 1 | 1 | 2 | 2 | 2 | 1.3 | 201302121 | 170623929 | tier4 | NA | 12926 | non-validated | 0.37456 |
| LUSC | TCGA-39-5011-01A | TCGA-39-5011 | TMSB10|CLCN3 | TMSB10 | CLCN3 | 2 | 4 | 1 | 1 | 2 | 22 | 11 | 100 | 85133795 | 170623929 | tier3 | NA | 18293 | NA | 0 |
| PRAD | TCGA-HC-7736-01A | TCGA-HC-7736 | NDRG1|CLCN3 | NDRG1 | CLCN3 | 8 | 4 | -1 | 1 | 2 | 4 | 4 | 0.9 | 134249419 | 170623929 | tier4 | NA | 11275 | NA | 0.36453 |
| PRAD | TCGA-CH-5794-01A | TCGA-CH-5794 | RAB7A|CLCN3 | RAB7A | CLCN3 | 3 | 4 | 1 | 1 | 2 | 8 | 4 | 1.9 | 128533639 | 170623929 | tier2 | NA | 14125 | NA | 0 |
| PRAD | TCGA-G9-6371-01A | TCGA-G9-6371 | TMBIM6|CLCN3 | TMBIM6 | CLCN3 | 12 | 4 | 1 | 1 | 2 | 65 | 40 | 0.78 | 50158717 | 170623929 | tier3 | NA | 17886 | NA | 0 |
| UCEC | TCGA-EY-A1GO-01A | TCGA-EY-A1GO | ACTG1|CLCN3 | ACTG1 | CLCN3 | 17 | 4 | -1 | 1 | 2 | 23 | 11 | 0.46 | 79476999 | 170623929 | tier3 | NA | 359 | NA | 0.37406 |
| UCEC | TCGA-E6-A2P8-01A | TCGA-E6-A2P8 | GNL3|CLCN3 | GNL3 | CLCN3 | 3 | 4 | 1 | 1 | 2 | 2 | 2 | 0.14 | 52728508 | 170623929 | tier3 | NA | 7242 | NA | 0.37001 |
| PRAD | TCGA-EJ-5511-01A | TCGA-EJ-5511 | KIAA1430|AADAT | KIAA1430 | AADAT | 4 | 4 | -1 | -1 | 16 | 3 | 3 | 0.032 | 186111297 | 171008399 | tier1 | Out-of-frame | 8869 | NA | 0.33928 |
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