Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-AO-A128-01A | TCGA-AO-A128 | LUC7L3|ABCC3 | LUC7L3 | ABCC3 | 17 | 17 | 1 | 1 | 2 | 3 | 2 | 0.031 | 48822174 | 48750332 | tier3 | In-frame | 9682 | NA | 0.34646 |
| BRCA | TCGA-BH-A0AW-01A | TCGA-BH-A0AW | MED1|ABCC3 | MED1 | ABCC3 | 17 | 17 | -1 | 1 | 309 | 241 | 226 | 0.31 | 37604051 | 48733193 | tier1 | In-frame | 10147 | NA | 0.36447 |
| STAD | TCGA-BR-7901-01A | TCGA-BR-7901 | LUC7L3|ABCC3 | LUC7L3 | ABCC3 | 17 | 17 | 1 | 1 | 3 | 25 | 23 | 0.031 | 48797192 | 48744915 | tier1 | In-frame | 9683 | NA | 0.34646 |
| BRCA | TCGA-A7-A3J0-01A | TCGA-A7-A3J0 | MPP2|PPY | MPP2 | PPY | 17 | 17 | -1 | -1 | 6 | 4 | 4 | 0.24 | 41975630 | 42019022 | tier1 | In-frame | 10606 | NA | 0.35753 |
| BRCA | TCGA-BH-A18V-06A | TCGA-BH-A18V | MPP2|PPY | MPP2 | PPY | 17 | 17 | -1 | -1 | 18 | 52 | 48 | 0.24 | 41975630 | 42019022 | tier1 | In-frame | 10607 | NA | 0.35753 |
| COAD | TCGA-F4-6461-01A | TCGA-F4-6461 | DHX8|PPY | DHX8 | PPY | 17 | 17 | 1 | -1 | 2 | 3 | 3 | 100 | 41561553 | 42018582 | tier2 | Out-of-frame | 4811 | NA | 0.35765 |
| PRAD | TCGA-HC-7209-01A | TCGA-HC-7209 | EFTUD2|DUSP3 | EFTUD2 | DUSP3 | 17 | 17 | -1 | -1 | 9 | 14 | 14 | 0.18 | 42961017 | 41847182 | tier1 | Out-of-frame | 5366 | NA | 0.37495 |
| LUAD | TCGA-86-8673-01A | TCGA-86-8673 | LRRC68|CACNG1 | LRRC68 | CACNG1 | 19 | 17 | 1 | 1 | 23 | 7 | 7 | 0.14 | 45596785 | 65050112 | tier2 | In-frame | 9585 | NA | 0.35178 |
| BRCA | TCGA-3C-AALI-01A | TCGA-3C-AALI | CWC25|PRKAR1A | CWC25 | PRKAR1A | 17 | 17 | -1 | 1 | 16 | 15 | 13 | 0.31 | 36981419 | 66511535 | tier1 | CDS-5UTR | 4465 | NA | 0.37003 |
| BRCA | TCGA-3C-AALI-01A | TCGA-3C-AALI | STARD3|FAM20A | STARD3 | FAM20A | 17 | 17 | 1 | -1 | 12 | 16 | 14 | 0.12 | 37793484 | 66548092 | tier1 | 5UTR-CDS | 17004 | NA | 0 |
| BLCA | TCGA-DK-AA76-01A | TCGA-DK-AA76 | LCOR|MAP2K6 | LCOR | MAP2K6 | 10 | 17 | 1 | 1 | 37 | 10 | 10 | 0.016 | 98667504 | 67521042 | tier1 | 5UTR-CDS | 9257 | NA | 0.38612 |
| BRCA | TCGA-E2-A109-01A | TCGA-E2-A109 | EVPL|MAP2K6 | EVPL | MAP2K6 | 17 | 17 | -1 | 1 | 61 | 47 | 43 | 0.12 | 74023182 | 67501921 | tier1 | Out-of-frame | 5886 | validated | 0.38651 |
| OV | TCGA-24-1431-01A | TCGA-24-1431 | TAX1BP3|PMP22 | TAX1BP3 | PMP22 | 17 | 17 | -1 | -1 | 14 | 14 | 10 | 1.1 | 3567973 | 15134397 | tier1 | Out-of-frame | 17438 | NA | 0 |
| BRCA | TCGA-GI-A2C9-01A | TCGA-GI-A2C9 | C17orf63|PHF12 | C17orf63 | PHF12 | 17 | 17 | -1 | -1 | 33 | 7 | 6 | 0.017 | 27139227 | 27254081 | tier1 | 5UTR-CDS | 2518 | validated | 0 |
| ESCA | TCGA-LN-A8HZ-01A | TCGA-LN-A8HZ | FBXL18|PHF12 | FBXL18 | PHF12 | 7 | 17 | -1 | -1 | 3 | 4 | 3 | 0.17 | 5540119 | 27238255 | tier1 | Out-of-frame | 6297 | NA | 0.36876 |
| GBM | TCGA-06-2559-01A | TCGA-06-2559 | KIAA1211|NMU | KIAA1211 | NMU | 4 | 4 | 1 | -1 | 19 | 66 | 63 | 0.46 | 57045596 | 56496627 | tier1 | 5UTR-CDS | 8831 | NA | 0.35602 |
| UVM | TCGA-YZ-A983-01A | TCGA-YZ-A983 | FAM193A|NMU | FAM193A | NMU | 4 | 4 | 1 | -1 | 7 | 4 | 4 | 100 | 2665015 | 56496627 | tier1 | Out-of-frame | 6136 | NA | 0.34904 |
| SARC | TCGA-DX-A3U5-01A | TCGA-DX-A3U5 | KIAA1109|NFKB1 | KIAA1109 | NFKB1 | 4 | 4 | 1 | 1 | 3 | 7 | 6 | 0.19 | 123075267 | 103446669 | tier1 | 5UTR-5UTR | 8826 | non-validated | 0.38704 |
| LUAD | TCGA-50-6592-01A | TCGA-50-6592 | CHIC2|MANBA | CHIC2 | MANBA | 4 | 4 | -1 | -1 | 5 | 3 | 3 | 1.5 | 54915122 | 103611928 | tier1 | Out-of-frame | 3679 | NA | 0.35711 |
| HNSC | TCGA-UP-A6WW-01A | TCGA-UP-A6WW | TSPAN5|MAPK10 | TSPAN5 | MAPK10 | 4 | 4 | -1 | -1 | 14 | 22 | 17 | 1.7 | 99579297 | 86938528 | tier1 | Out-of-frame | 18802 | NA | 0 |
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