TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
LUSC	TCGA-60-2719-01A	TCGA-60-2719	AC091153.1\|CHRNE	AC091153.1	CHRNE	17	17	-1	-1	9	4	2	0.36	4579652	4806058	tier1	In-frame	203	non-validated	0.34282
HNSC	TCGA-BA-6869-01A	TCGA-BA-6869	PEMT\|RAI1	PEMT	RAI1	17	17	-1	1	21	8	6	0.081	17480234	17627342	tier1	CDS-5UTR	12605	non-validated	0.34874
BRCA	TCGA-A2-A25B-01A	TCGA-A2-A25B	SPAG5\|BLMH	SPAG5	BLMH	17	17	-1	-1	83	70	69	0.35	26925528	28576186	tier1	Out-of-frame	16651	non-validated	0
PRAD	TCGA-HC-7742-01A	TCGA-HC-7742	TMEM97\|BLMH	TMEM97	BLMH	17	17	1	-1	19	19	15	0.76	26646391	28601215	tier1	In-frame	18067	NA	0
ESCA	TCGA-2H-A9GJ-01A	TCGA-2H-A9GJ	GOSR1\|CPD	GOSR1	CPD	17	17	1	1	14	83	75	0.04	28811788	28788198	tier1	In-frame	7302	NA	0.3539
LIHC	TCGA-BC-A8YO-01A	TCGA-BC-A8YO	GOSR1\|CPD	GOSR1	CPD	17	17	1	1	72	49	47	0.04	28811788	28788895	tier1	In-frame	7303	NA	0.3539
PRAD	TCGA-HC-7742-01A	TCGA-HC-7742	NUFIP2\|CPD	NUFIP2	CPD	17	17	-1	1	7	1	1	0.29	27620801	28712007	tier4	Out-of-frame	11875	NA	0.34772
LUSC	TCGA-66-2783-01A	TCGA-66-2783	MSI2\|ICAM2	MSI2	ICAM2	17	17	1	-1	255	197	186	0.1	55704664	62081324	tier1	In-frame	10719	NA	0.36322
BLCA	TCGA-FD-A43N-01A	TCGA-FD-A43N	RAB11FIP4\|ACCN1	RAB11FIP4	ACCN1	17	17	1	-1	5	2	2	0.087	29761140	31351032	tier1	Out-of-frame	14045	NA	0
BRCA	TCGA-AR-A0TX-01A	TCGA-AR-A0TX	ARHGAP23\|ACCN1	ARHGAP23	ACCN1	17	17	1	-1	18	32	30	0.22	36636124	31351032	tier1	In-frame	1231	non-validated	0.36541
LUAD	TCGA-78-7155-01A	TCGA-78-7155	MYO1D\|ACCN1	MYO1D	ACCN1	17	17	-1	-1	2	1	1	0.64	31203796	31355410	tier2	Out-of-frame	10969	NA	0.37022
SARC	TCGA-PC-A5DL-01A	TCGA-PC-A5DL	MYO1D\|ACCN1	MYO1D	ACCN1	17	17	-1	-1	5	2	2	0.64	31203796	31355410	tier1	Out-of-frame	10971	NA	0.37022
SARC	TCGA-DX-A3M1-01A	TCGA-DX-A3M1	NF1\|ACCN1	NF1	ACCN1	17	17	1	-1	8	3	2	1.5	29560231	31439085	tier1	In-frame	11394	validated	0.37421
STAD	TCGA-BR-4357-01A	TCGA-BR-4357	MYO1D\|ACCN1	MYO1D	ACCN1	17	17	-1	-1	4	1	1	0.64	31039006	31439085	tier2	In-frame	10970	NA	0.37022
BRCA	TCGA-A8-A09I-01A	TCGA-A8-A09I	WIPF2\|EZH1	WIPF2	EZH1	17	17	1	-1	6	8	6	0.008	38421398	40882936	tier1	CDS-5UTR	19864	non-validated	0
HNSC	TCGA-D6-A6EP-01A	TCGA-D6-A6EP	RPL18\|COL1A1	RPL18	COL1A1	19	17	-1	-1	2	1	1	0.26	49118650	48278993	tier3	NA	14980	NA	0
BRCA	TCGA-A2-A1G1-01A	TCGA-A2-A1G1	SLC35G6\|ALOX12	SLC35G6	ALOX12	17	17	1	1	73	6	6	0.16	7388176	6903655	tier1	In-frame	16167	NA	0
ESCA	TCGA-V5-A7RE-01A	TCGA-V5-A7RE	MMD\|HDAC5	MMD	HDAC5	17	17	-1	-1	19	58	55	0.003	53499031	42165966	tier1	Out-of-frame	10541	NA	0.37248
PRAD	TCGA-YL-A8HO-01A	TCGA-YL-A8HO	AFF3\|HDAC5	AFF3	HDAC5	2	17	-1	-1	2	3	3	0.01	100623094	42171202	tier4	Out-of-frame	592	NA	0.37414
UCEC	TCGA-EY-A4KR-01A	TCGA-EY-A4KR	MACF1\|HDAC5	MACF1	HDAC5	1	17	1	-1	2	3	2	0.11	39723700	42195072	tier2	CDS-5UTR	9730	NA	0.38177

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